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SPTY2D1 (SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae))

Identity

Alias_namesSPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
Alias_symbol (synonym)FLJ39441
DKFZp686I068
Spt2
Other alias-
HGNC (Hugo) SPTY2D1
LocusID (NCBI) 144108
Atlas_Id 74221
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 18627948 and ends at 18656020 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPTY2D1   26818
Cards
Entrez_Gene (NCBI)SPTY2D1  144108  SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)
Aliases
GeneCards (Weizmann)SPTY2D1
Ensembl hg19 (Hinxton)ENSG00000179119 [Gene_View]  chr11:18627948-18656020 [Contig_View]  SPTY2D1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179119 [Gene_View]  chr11:18627948-18656020 [Contig_View]  SPTY2D1 [Vega]
ICGC DataPortalENSG00000179119
TCGA cBioPortalSPTY2D1
AceView (NCBI)SPTY2D1
Genatlas (Paris)SPTY2D1
WikiGenes144108
SOURCE (Princeton)SPTY2D1
Genetics Home Reference (NIH)SPTY2D1
Genomic and cartography
GoldenPath hg19 (UCSC)SPTY2D1  -     chr11:18627948-18656020 -  11p15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SPTY2D1  -     11p15.1   [Description]    (hg38-Dec_2013)
EnsemblSPTY2D1 - 11p15.1 [CytoView hg19]  SPTY2D1 - 11p15.1 [CytoView hg38]
Mapping of homologs : NCBISPTY2D1 [Mapview hg19]  SPTY2D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086471 AF452716 AK096694 AK096760 AK304078
RefSeq transcript (Entrez)NM_194285
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)SPTY2D1
Cluster EST : UnigeneHs.745113 [ NCBI ]
CGAP (NCI)Hs.745113
Alternative Splicing GalleryENSG00000179119
Gene ExpressionSPTY2D1 [ NCBI-GEO ]   SPTY2D1 [ EBI - ARRAY_EXPRESS ]   SPTY2D1 [ SEEK ]   SPTY2D1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPTY2D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144108
GTEX Portal (Tissue expression)SPTY2D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68D10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68D10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68D10
Splice isoforms : SwissVarQ68D10
PhosPhoSitePlusQ68D10
Domains : Interpro (EBI)Chromatin_SPT2   
Domain families : Pfam (Sanger)SPT2 (PF08243)   
Domain families : Pfam (NCBI)pfam08243   
Domain families : Smart (EMBL)SPT2 (SM00784)  
Conserved Domain (NCBI)SPTY2D1
DMDM Disease mutations144108
Blocks (Seattle)SPTY2D1
SuperfamilyQ68D10
Human Protein AtlasENSG00000179119
Peptide AtlasQ68D10
HPRD13436
IPIIPI00396008   IPI00879460   IPI00878933   IPI00412876   
Protein Interaction databases
DIP (DOE-UCLA)Q68D10
IntAct (EBI)Q68D10
FunCoupENSG00000179119
BioGRIDSPTY2D1
STRING (EMBL)SPTY2D1
ZODIACSPTY2D1
Ontologies - Pathways
QuickGOQ68D10
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkSPTY2D1
Atlas of Cancer Signalling NetworkSPTY2D1
Wikipedia pathwaysSPTY2D1
Orthology - Evolution
OrthoDB144108
GeneTree (enSembl)ENSG00000179119
Phylogenetic Trees/Animal Genes : TreeFamSPTY2D1
HOVERGENQ68D10
HOGENOMQ68D10
Homologs : HomoloGeneSPTY2D1
Homology/Alignments : Family Browser (UCSC)SPTY2D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPTY2D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPTY2D1
dbVarSPTY2D1
ClinVarSPTY2D1
1000_GenomesSPTY2D1 
Exome Variant ServerSPTY2D1
ExAC (Exome Aggregation Consortium)SPTY2D1 (select the gene name)
Genetic variants : HAPMAP144108
Genomic Variants (DGV)SPTY2D1 [DGVbeta]
DECIPHER (Syndromes)11:18627948-18656020  ENSG00000179119
CONAN: Copy Number AnalysisSPTY2D1 
Mutations
ICGC Data PortalSPTY2D1 
TCGA Data PortalSPTY2D1 
Broad Tumor PortalSPTY2D1
OASIS PortalSPTY2D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPTY2D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPTY2D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SPTY2D1
DgiDB (Drug Gene Interaction Database)SPTY2D1
DoCM (Curated mutations)SPTY2D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPTY2D1 (select a term)
intoGenSPTY2D1
Cancer3DSPTY2D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPTY2D1
Genetic Testing Registry SPTY2D1
NextProtQ68D10 [Medical]
TSGene144108
GENETestsSPTY2D1
Huge Navigator SPTY2D1 [HugePedia]
snp3D : Map Gene to Disease144108
BioCentury BCIQSPTY2D1
ClinGenSPTY2D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144108
Chemical/Pharm GKB GenePA142670875
Clinical trialSPTY2D1
Miscellaneous
canSAR (ICR)SPTY2D1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPTY2D1
EVEXSPTY2D1
GoPubMedSPTY2D1
iHOPSPTY2D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:38 CET 2017

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