Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SPX (spexin hormone)

Identity

Alias_namesC12orf39
chromosome 12 open reading frame 39
Alias_symbol (synonym)MGC10946
NPQ
spexin
Other alias
HGNC (Hugo) SPX
LocusID (NCBI) 80763
Atlas_Id 74223
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 21526257 and ends at 21532951 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPX   28139
Cards
Entrez_Gene (NCBI)SPX  80763  spexin hormone
AliasesC12orf39
GeneCards (Weizmann)SPX
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:21526257-21532951 [Contig_View]  SPX [Vega]
TCGA cBioPortalSPX
AceView (NCBI)SPX
Genatlas (Paris)SPX
WikiGenes80763
SOURCE (Princeton)SPX
Genetics Home Reference (NIH)SPX
Genomic and cartography
GoldenPath hg38 (UCSC)SPX  -     chr12:21526257-21532951 +  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPX  -     12p12.1   [Description]    (hg19-Feb_2009)
EnsemblSPX - 12p12.1 [CytoView hg19]  SPX - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBISPX [Mapview hg19]  SPX [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027273 AK075342 AK311147 AK311217 BC004336
RefSeq transcript (Entrez)NM_030572
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPX
Cluster EST : UnigeneHs.130692 [ NCBI ]
CGAP (NCI)Hs.130692
Gene ExpressionSPX [ NCBI-GEO ]   SPX [ EBI - ARRAY_EXPRESS ]   SPX [ SEEK ]   SPX [ MEM ]
Gene Expression Viewer (FireBrowse)SPX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80763
GTEX Portal (Tissue expression)SPX
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BT56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BT56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BT56
Splice isoforms : SwissVarQ9BT56
PhosPhoSitePlusQ9BT56
Domains : Interpro (EBI)Spexin   
Domain families : Pfam (Sanger)Spexin (PF15171)   
Domain families : Pfam (NCBI)pfam15171   
Conserved Domain (NCBI)SPX
DMDM Disease mutations80763
Blocks (Seattle)SPX
SuperfamilyQ9BT56
Peptide AtlasQ9BT56
HPRD14405
IPIIPI00012236   IPI01014143   
Protein Interaction databases
DIP (DOE-UCLA)Q9BT56
IntAct (EBI)Q9BT56
BioGRIDSPX
STRING (EMBL)SPX
ZODIACSPX
Ontologies - Pathways
QuickGOQ9BT56
Ontology : AmiGOpositive regulation of systemic arterial blood pressure  neuropeptide hormone activity  extracellular space  negative regulation of heart rate  transport vesicle  negative regulation of appetite  negative regulation of renal sodium excretion  long-chain fatty acid import  regulation of sensory perception of pain  
Ontology : EGO-EBIpositive regulation of systemic arterial blood pressure  neuropeptide hormone activity  extracellular space  negative regulation of heart rate  transport vesicle  negative regulation of appetite  negative regulation of renal sodium excretion  long-chain fatty acid import  regulation of sensory perception of pain  
NDEx NetworkSPX
Atlas of Cancer Signalling NetworkSPX
Wikipedia pathwaysSPX
Orthology - Evolution
OrthoDB80763
Phylogenetic Trees/Animal Genes : TreeFamSPX
HOVERGENQ9BT56
HOGENOMQ9BT56
Homologs : HomoloGeneSPX
Homology/Alignments : Family Browser (UCSC)SPX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPX
dbVarSPX
ClinVarSPX
1000_GenomesSPX 
Exome Variant ServerSPX
ExAC (Exome Aggregation Consortium)SPX (select the gene name)
Genetic variants : HAPMAP80763
Genomic Variants (DGV)SPX [DGVbeta]
DECIPHERSPX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPX 
Mutations
ICGC Data PortalSPX 
TCGA Data PortalSPX 
Broad Tumor PortalSPX
OASIS PortalSPX [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSPX
BioMutasearch SPX
DgiDB (Drug Gene Interaction Database)SPX
DoCM (Curated mutations)SPX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPX (select a term)
intoGenSPX
Cancer3DSPX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSPX
Genetic Testing Registry SPX
NextProtQ9BT56 [Medical]
TSGene80763
GENETestsSPX
Target ValidationSPX
Huge Navigator SPX [HugePedia]
snp3D : Map Gene to Disease80763
BioCentury BCIQSPX
ClinGenSPX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80763
Chemical/Pharm GKB GenePA143485369
Clinical trialSPX
Miscellaneous
canSAR (ICR)SPX (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPX
EVEXSPX
GoPubMedSPX
iHOPSPX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:40:27 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.