Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SPZ1 (spermatogenic leucine zipper 1)

Identity

Other aliasNYD-TSP1
PPP1R148
HGNC (Hugo) SPZ1
LocusID (NCBI) 84654
Atlas_Id 57145
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 80320004 and ends at 80321832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SPZ1   30721
Cards
Entrez_Gene (NCBI)SPZ1  84654  spermatogenic leucine zipper 1
AliasesNYD-TSP1; PPP1R148
GeneCards (Weizmann)SPZ1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:80320004-80321832 [Contig_View]  SPZ1 [Vega]
TCGA cBioPortalSPZ1
AceView (NCBI)SPZ1
Genatlas (Paris)SPZ1
WikiGenes84654
SOURCE (Princeton)SPZ1
Genetics Home Reference (NIH)SPZ1
Genomic and cartography
GoldenPath hg38 (UCSC)SPZ1  -     chr5:80320004-80321832 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SPZ1  -     5q14.1   [Description]    (hg19-Feb_2009)
EnsemblSPZ1 - 5q14.1 [CytoView hg19]  SPZ1 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBISPZ1 [Mapview hg19]  SPZ1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF333098 AI138399 AK098575 AK314007 BC033798
RefSeq transcript (Entrez)NM_032567
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SPZ1
Cluster EST : UnigeneHs.519403 [ NCBI ]
CGAP (NCI)Hs.519403
Gene ExpressionSPZ1 [ NCBI-GEO ]   SPZ1 [ EBI - ARRAY_EXPRESS ]   SPZ1 [ SEEK ]   SPZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)SPZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84654
GTEX Portal (Tissue expression)SPZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXG8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXG8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXG8
Splice isoforms : SwissVarQ9BXG8
PhosPhoSitePlusQ9BXG8
Domains : Interpro (EBI)SPZ1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SPZ1
DMDM Disease mutations84654
Blocks (Seattle)SPZ1
SuperfamilyQ9BXG8
Peptide AtlasQ9BXG8
IPIIPI00829685   IPI00963922   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXG8
IntAct (EBI)Q9BXG8
BioGRIDSPZ1
STRING (EMBL)SPZ1
ZODIACSPZ1
Ontologies - Pathways
QuickGOQ9BXG8
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkSPZ1
Atlas of Cancer Signalling NetworkSPZ1
Wikipedia pathwaysSPZ1
Orthology - Evolution
OrthoDB84654
Phylogenetic Trees/Animal Genes : TreeFamSPZ1
HOVERGENQ9BXG8
HOGENOMQ9BXG8
Homologs : HomoloGeneSPZ1
Homology/Alignments : Family Browser (UCSC)SPZ1
Gene fusions - Rearrangements
Tumor Fusion PortalSPZ1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSPZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SPZ1
dbVarSPZ1
ClinVarSPZ1
1000_GenomesSPZ1 
Exome Variant ServerSPZ1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84654
Genomic Variants (DGV)SPZ1 [DGVbeta]
DECIPHERSPZ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSPZ1 
Mutations
ICGC Data PortalSPZ1 
TCGA Data PortalSPZ1 
Broad Tumor PortalSPZ1
OASIS PortalSPZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSPZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSPZ1
BioMutasearch SPZ1
DgiDB (Drug Gene Interaction Database)SPZ1
DoCM (Curated mutations)SPZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SPZ1 (select a term)
intoGenSPZ1
Cancer3DSPZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSPZ1
MedgenSPZ1
Genetic Testing Registry SPZ1
NextProtQ9BXG8 [Medical]
TSGene84654
GENETestsSPZ1
Target ValidationSPZ1
Huge Navigator SPZ1 [HugePedia]
snp3D : Map Gene to Disease84654
BioCentury BCIQSPZ1
ClinGenSPZ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84654
Chemical/Pharm GKB GenePA142670869
Clinical trialSPZ1
Miscellaneous
canSAR (ICR)SPZ1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSPZ1
EVEXSPZ1
GoPubMedSPZ1
iHOPSPZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:36:25 CET 2017

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