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SQOR (sulfide quinone oxidoreductase)

Identity

Alias_namesSQRDL
sulfide quinone reductase-like (yeast)
Alias_symbol (synonym)CGI-44
SQR
Other aliasPRO1975
HGNC (Hugo) SQOR
LocusID (NCBI) 58472
Atlas_Id 79813
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45631148 and ends at 45691294 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SQOR   20390
Cards
Entrez_Gene (NCBI)SQOR  58472  sulfide quinone oxidoreductase
AliasesCGI-44; PRO1975; SQR; SQRDL
GeneCards (Weizmann)SQOR
Ensembl hg19 (Hinxton)ENSG00000137767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137767 [Gene_View]  chr15:45631148-45691294 [Contig_View]  SQOR [Vega]
ICGC DataPortalENSG00000137767
TCGA cBioPortalSQOR
AceView (NCBI)SQOR
Genatlas (Paris)SQOR
WikiGenes58472
SOURCE (Princeton)SQOR
Genetics Home Reference (NIH)SQOR
Genomic and cartography
GoldenPath hg38 (UCSC)SQOR  -     chr15:45631148-45691294 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SQOR  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblSQOR - 15q21.1 [CytoView hg19]  SQOR - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISQOR [Mapview hg19]  SQOR [Mapview hg38]
OMIM617658   
Gene and transcription
Genbank (Entrez)AF042284 AF118085 AF151802 AI240325 AK130140
RefSeq transcript (Entrez)NM_001271213 NM_021199
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SQOR
Cluster EST : UnigeneHs.743355 [ NCBI ]
CGAP (NCI)Hs.743355
Alternative Splicing GalleryENSG00000137767
Gene ExpressionSQOR [ NCBI-GEO ]   SQOR [ EBI - ARRAY_EXPRESS ]   SQOR [ SEEK ]   SQOR [ MEM ]
Gene Expression Viewer (FireBrowse)SQOR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58472
GTEX Portal (Tissue expression)SQOR
Human Protein AtlasENSG00000137767-SQOR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N5
Splice isoforms : SwissVarQ9Y6N5
PhosPhoSitePlusQ9Y6N5
Domains : Interpro (EBI)FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)Pyr_redox_2 (PF07992)   
Domain families : Pfam (NCBI)pfam07992   
Conserved Domain (NCBI)SQOR
DMDM Disease mutations58472
Blocks (Seattle)SQOR
SuperfamilyQ9Y6N5
Human Protein Atlas [tissue]ENSG00000137767-SQOR [tissue]
Peptide AtlasQ9Y6N5
IPIIPI00009634   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N5
IntAct (EBI)Q9Y6N5
FunCoupENSG00000137767
BioGRIDSQOR
STRING (EMBL)SQOR
ZODIACSQOR
Ontologies - Pathways
QuickGOQ9Y6N5
Ontology : AmiGOmitochondrial inner membrane  quinone binding  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide:quinone oxidoreductase activity  hydrogen sulfide metabolic process  
Ontology : EGO-EBImitochondrial inner membrane  quinone binding  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide:quinone oxidoreductase activity  hydrogen sulfide metabolic process  
NDEx NetworkSQOR
Atlas of Cancer Signalling NetworkSQOR
Wikipedia pathwaysSQOR
Orthology - Evolution
OrthoDB58472
GeneTree (enSembl)ENSG00000137767
Phylogenetic Trees/Animal Genes : TreeFamSQOR
HOVERGENQ9Y6N5
HOGENOMQ9Y6N5
Homologs : HomoloGeneSQOR
Homology/Alignments : Family Browser (UCSC)SQOR
Gene fusions - Rearrangements
Tumor Fusion PortalSQOR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSQOR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SQOR
dbVarSQOR
ClinVarSQOR
1000_GenomesSQOR 
Exome Variant ServerSQOR
ExAC (Exome Aggregation Consortium)ENSG00000137767
GNOMAD BrowserENSG00000137767
Genetic variants : HAPMAP58472
Genomic Variants (DGV)SQOR [DGVbeta]
DECIPHERSQOR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSQOR 
Mutations
ICGC Data PortalSQOR 
TCGA Data PortalSQOR 
Broad Tumor PortalSQOR
OASIS PortalSQOR [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSQOR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SQOR
DgiDB (Drug Gene Interaction Database)SQOR
DoCM (Curated mutations)SQOR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SQOR (select a term)
intoGenSQOR
Cancer3DSQOR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617658   
Orphanet
DisGeNETSQOR
MedgenSQOR
Genetic Testing Registry SQOR
NextProtQ9Y6N5 [Medical]
TSGene58472
GENETestsSQOR
Target ValidationSQOR
Huge Navigator SQOR [HugePedia]
snp3D : Map Gene to Disease58472
BioCentury BCIQSQOR
ClinGenSQOR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58472
Chemical/Pharm GKB GenePA134894920
Clinical trialSQOR
Miscellaneous
canSAR (ICR)SQOR (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSQOR
EVEXSQOR
GoPubMedSQOR
iHOPSQOR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:33 CET 2017

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