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SQRDL (sulfide quinone reductase-like (yeast))

Identity

Alias_symbol (synonym)CGI-44
Other aliasPRO1975
SQOR
HGNC (Hugo) SQRDL
LocusID (NCBI) 58472
Atlas_Id 54669
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45923346 and ends at 45983492 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD17 (4q13.3) / SQRDL (15q21.1)BLOC1S6 (15q21.1) / SQRDL (15q21.1)NID1 (1q42.3) / SQRDL (15q21.1)
RAB27A (15q21.3) / SQRDL (15q21.1)SQRDL (15q21.1) / NID1 (1q42.3)ANKRD17 4q13.3 / SQRDL 15q21.1
RAB27A 15q21.3 / SQRDL 15q21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SQRDL   20390
Cards
Entrez_Gene (NCBI)SQRDL  58472  sulfide quinone reductase-like (yeast)
AliasesCGI-44; PRO1975; SQOR
GeneCards (Weizmann)SQRDL
Ensembl hg19 (Hinxton)ENSG00000137767 [Gene_View]  chr15:45923346-45983492 [Contig_View]  SQRDL [Vega]
Ensembl hg38 (Hinxton)ENSG00000137767 [Gene_View]  chr15:45923346-45983492 [Contig_View]  SQRDL [Vega]
ICGC DataPortalENSG00000137767
TCGA cBioPortalSQRDL
AceView (NCBI)SQRDL
Genatlas (Paris)SQRDL
WikiGenes58472
SOURCE (Princeton)SQRDL
Genetics Home Reference (NIH)SQRDL
Genomic and cartography
GoldenPath hg19 (UCSC)SQRDL  -     chr15:45923346-45983492 +  15q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SQRDL  -     15q21.1   [Description]    (hg38-Dec_2013)
EnsemblSQRDL - 15q21.1 [CytoView hg19]  SQRDL - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBISQRDL [Mapview hg19]  SQRDL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF042284 AF118085 AF151802 AI240325 AK130140
RefSeq transcript (Entrez)NM_001271213 NM_021199
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SQRDL
Cluster EST : UnigeneHs.743355 [ NCBI ]
CGAP (NCI)Hs.743355
Alternative Splicing GalleryENSG00000137767
Gene ExpressionSQRDL [ NCBI-GEO ]   SQRDL [ EBI - ARRAY_EXPRESS ]   SQRDL [ SEEK ]   SQRDL [ MEM ]
Gene Expression Viewer (FireBrowse)SQRDL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58472
GTEX Portal (Tissue expression)SQRDL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6N5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6N5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6N5
Splice isoforms : SwissVarQ9Y6N5
PhosPhoSitePlusQ9Y6N5
Domains : Interpro (EBI)FAD/NAD-binding_dom   
Domain families : Pfam (Sanger)Pyr_redox_2 (PF07992)   
Domain families : Pfam (NCBI)pfam07992   
Conserved Domain (NCBI)SQRDL
DMDM Disease mutations58472
Blocks (Seattle)SQRDL
SuperfamilyQ9Y6N5
Human Protein AtlasENSG00000137767
Peptide AtlasQ9Y6N5
HPRD18102
IPIIPI00009634   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6N5
IntAct (EBI)Q9Y6N5
FunCoupENSG00000137767
BioGRIDSQRDL
STRING (EMBL)SQRDL
ZODIACSQRDL
Ontologies - Pathways
QuickGOQ9Y6N5
Ontology : AmiGOmitochondrial inner membrane  quinone binding  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide:quinone oxidoreductase activity  hydrogen sulfide metabolic process  
Ontology : EGO-EBImitochondrial inner membrane  quinone binding  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide oxidation, using sulfide:quinone oxidoreductase  sulfide:quinone oxidoreductase activity  hydrogen sulfide metabolic process  
Pathways : KEGGSulfur metabolism   
NDEx NetworkSQRDL
Atlas of Cancer Signalling NetworkSQRDL
Wikipedia pathwaysSQRDL
Orthology - Evolution
OrthoDB58472
GeneTree (enSembl)ENSG00000137767
Phylogenetic Trees/Animal Genes : TreeFamSQRDL
HOVERGENQ9Y6N5
HOGENOMQ9Y6N5
Homologs : HomoloGeneSQRDL
Homology/Alignments : Family Browser (UCSC)SQRDL
Gene fusions - Rearrangements
Fusion : MitelmanANKRD17/SQRDL [4q13.3/15q21.1]  [t(4;15)(q13;q21)]  
Fusion : MitelmanBLOC1S6/SQRDL [15q21.1/15q21.1]  [t(15;15)(q21;q21)]  
Fusion : MitelmanRAB27A/SQRDL [15q21.3/15q21.1]  [t(15;15)(q21;q21)]  
Fusion: TCGAANKRD17 4q13.3 SQRDL 15q21.1 LUAD
Fusion: TCGARAB27A 15q21.3 SQRDL 15q21.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSQRDL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SQRDL
dbVarSQRDL
ClinVarSQRDL
1000_GenomesSQRDL 
Exome Variant ServerSQRDL
ExAC (Exome Aggregation Consortium)SQRDL (select the gene name)
Genetic variants : HAPMAP58472
Genomic Variants (DGV)SQRDL [DGVbeta]
DECIPHER (Syndromes)15:45923346-45983492  ENSG00000137767
CONAN: Copy Number AnalysisSQRDL 
Mutations
ICGC Data PortalSQRDL 
TCGA Data PortalSQRDL 
Broad Tumor PortalSQRDL
OASIS PortalSQRDL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSQRDL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSQRDL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SQRDL
DgiDB (Drug Gene Interaction Database)SQRDL
DoCM (Curated mutations)SQRDL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SQRDL (select a term)
intoGenSQRDL
Cancer3DSQRDL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSQRDL
Genetic Testing Registry SQRDL
NextProtQ9Y6N5 [Medical]
TSGene58472
GENETestsSQRDL
Huge Navigator SQRDL [HugePedia]
snp3D : Map Gene to Disease58472
BioCentury BCIQSQRDL
ClinGenSQRDL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58472
Chemical/Pharm GKB GenePA134894920
Clinical trialSQRDL
Miscellaneous
canSAR (ICR)SQRDL (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSQRDL
EVEXSQRDL
GoPubMedSQRDL
iHOPSQRDL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:04 CET 2017

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