Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SQSTM1 (sequestosome 1)

Identity

Other namesA170
FTDALS3
OSIL
PDB3
ZIP3
p60
p62
p62B
HGNC (Hugo) SQSTM1
LocusID (NCBI) 8878
Atlas_Id 43999
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179233388 and ends at 179265077 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		ACTB (7p22.1) / SQSTM1 (5q35.3)ARHGDIA (17q25.3) / SQSTM1 (5q35.3)CYB561 (17q23.3) / SQSTM1 (5q35.3)
F3 (1p21.3) / SQSTM1 (5q35.3)FGFR1 (8p11.23) / SQSTM1 (5q35.3)FGR (1p36.11) / SQSTM1 (5q35.3)
GPX3 (5q33.1) / SQSTM1 (5q35.3)INS-IGF2 (11p15.5) / SQSTM1 (5q35.3)INTS1 (7p22.3) / SQSTM1 (5q35.3)
NCL (2q37.1) / SQSTM1 (5q35.3)PLEKHA6 (1q32.1) / SQSTM1 (5q35.3)PPP6R2 (22q13.33) / SQSTM1 (5q35.3)
RPL18 (19q13.33) / SQSTM1 (5q35.3)SIVA1 (14q32.33) / SQSTM1 (5q35.3)SQSTM1 (5q35.3) / ALK (2p23.2)
SQSTM1 (5q35.3) / AP1G2 (14q11.2)SQSTM1 (5q35.3) / FGFR1 (8p11.23)SQSTM1 (5q35.3) / GRIA1 (5q33.2)
SQSTM1 (5q35.3) / HIPK2 (7q34)SQSTM1 (5q35.3) / HSD17B8 (6p21.32)SQSTM1 (5q35.3) / KMT2C (7q36.1)
SQSTM1 (5q35.3) / NTRK1 (1q23.1)SQSTM1 (5q35.3) / NTRK2 (9q21.33)SQSTM1 (5q35.3) / NUP214 (9q34.13)
SQSTM1 (5q35.3) / PIGR (1q32.1)SQSTM1 (5q35.3) / PLIN2 (9p22.1)SQSTM1 (5q35.3) / PPM1K (4q22.1)
SQSTM1 (5q35.3) / RABGAP1L (1q25.1)SQSTM1 (5q35.3) / SQSTM1 (5q35.3)UTP3 (4q13.3) / SQSTM1 (5q35.3)
SQSTM1 5q35.3 / ALK 2p23.2ARHGDIA 17q25.3 / SQSTM1 5q35.3CYB561 17q23.3 / SQSTM1 5q35.3
GPX3 5q33.1 / SQSTM1 5q35.3NCL 2q37.1 / SQSTM1 5q35.3RPL18 19q13.33 / SQSTM1 5q35.3
SQSTM1 5q35.3 / AP1G2 14q11.2SQSTM1 5q35.3 / GRIA1 5q33.2SQSTM1 5q35.3 / NTRK1 1q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Protein

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(2;5)(p23;q35) SQSTM1/ALK

Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Paget's disease of bone

External links

Nomenclature
HGNC (Hugo)SQSTM1   11280
Cards
Entrez_Gene (NCBI)SQSTM1  8878  sequestosome 1
AliasesA170; FTDALS3; OSIL; PDB3; 
ZIP3; p60; p62; p62B
GeneCards (Weizmann)SQSTM1
Ensembl hg19 (Hinxton)ENSG00000161011 [Gene_View]  chr5:179233388-179265077 [Contig_View]  SQSTM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161011 [Gene_View]  chr5:179233388-179265077 [Contig_View]  SQSTM1 [Vega]
ICGC DataPortalENSG00000161011
TCGA cBioPortalSQSTM1
AceView (NCBI)SQSTM1
Genatlas (Paris)SQSTM1
WikiGenes8878
SOURCE (Princeton)SQSTM1
Genomic and cartography
GoldenPath hg19 (UCSC)SQSTM1  -     chr5:179233388-179265077 +  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SQSTM1  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblSQSTM1 - 5q35.3 [CytoView hg19]  SQSTM1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBISQSTM1 [Mapview hg19]  SQSTM1 [Mapview hg38]
OMIM601530   602080   616437   
Gene and transcription
Genbank (Entrez)AI333228 AK025146 AK093109 AK094484 AK096241
RefSeq transcript (Entrez)NM_001142298 NM_001142299 NM_003900
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_011342 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)SQSTM1
Cluster EST : UnigeneHs.724025 [ NCBI ]
CGAP (NCI)Hs.724025
Alternative Splicing GalleryENSG00000161011
Gene ExpressionSQSTM1 [ NCBI-GEO ]   SQSTM1 [ EBI - ARRAY_EXPRESS ]   SQSTM1 [ SEEK ]   SQSTM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SQSTM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8878
GTEX Portal (Tissue expression)SQSTM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13501 (Uniprot)
NextProtQ13501  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13501
Splice isoforms : SwissVarQ13501 (Swissvar)
PhosPhoSitePlusQ13501
Domaine pattern : Prosite (Expaxy)PB1 (PS51745)    UBA (PS50030)    ZF_ZZ_1 (PS01357)    ZF_ZZ_2 (PS50135)   
Domains : Interpro (EBI)PB1_dom    UBA    UBA-like    Znf_ZZ   
Domain families : Pfam (Sanger)PB1 (PF00564)    UBA_5 (PF16577)    ZZ (PF00569)   
Domain families : Pfam (NCBI)pfam00564    pfam16577    pfam00569   
Domain families : Smart (EMBL)PB1 (SM00666)  UBA (SM00165)  ZnF_ZZ (SM00291)  
DMDM Disease mutations8878
Blocks (Seattle)SQSTM1
PDB (SRS)1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
PDB (PDBSum)1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
PDB (IMB)1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
PDB (RSDB)1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
Structural Biology KnowledgeBase1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
SCOP (Structural Classification of Proteins)1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
CATH (Classification of proteins structures)1Q02    2JY7    2JY8    2K0B    2KNV    4MJS    4UF8    4UF9   
SuperfamilyQ13501
Human Protein AtlasENSG00000161011
Peptide AtlasQ13501
HPRD03319
IPIIPI00179473   IPI00784104   IPI00878713   IPI00908710   IPI00879205   IPI00013676   IPI01013652   IPI00964217   IPI00965064   IPI00964756   IPI00964222   
Protein Interaction databases
DIP (DOE-UCLA)Q13501
IntAct (EBI)Q13501
FunCoupENSG00000161011
BioGRIDSQSTM1
STRING (EMBL)SQSTM1
ZODIACSQSTM1
Ontologies - Pathways
QuickGOQ13501
Ontology : AmiGOpre-autophagosomal structure  mitophagy  cytoplasmic mRNA processing body  positive regulation of protein phosphorylation  immune system process  protein serine/threonine kinase activity  protein kinase C binding  protein binding  nucleoplasm  cytoplasm  late endosome  autophagosome  endoplasmic reticulum  cytosol  protein phosphorylation  ubiquitin-dependent protein catabolic process  autophagy  autophagy  apoptotic process  response to stress  protein localization  zinc ion binding  regulation of mitochondrion organization  endosomal transport  inclusion body  aggresome  macroautophagy  macroautophagy  positive regulation of macroautophagy  PML body  protein kinase binding  cell differentiation  receptor tyrosine kinase binding  cytoplasmic vesicle  ubiquitin protein ligase binding  intracellular signal transduction  SH2 domain binding  identical protein binding  protein homodimerization activity  positive regulation of apoptotic process  negative regulation of apoptotic process  regulation of I-kappaB kinase/NF-kappaB signaling  ubiquitin binding  ubiquitin binding  negative regulation of growth of symbiont in host  amphisome  autolysosome  positive regulation of transcription from RNA polymerase II promoter  regulation of Ras protein signal transduction  protein heterooligomerization  regulation of protein complex stability  extracellular exosome  K63-linked polyubiquitin binding  sperm midpiece  mitophagy in response to mitochondrial depolarization  mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpre-autophagosomal structure  mitophagy  cytoplasmic mRNA processing body  positive regulation of protein phosphorylation  immune system process  protein serine/threonine kinase activity  protein kinase C binding  protein binding  nucleoplasm  cytoplasm  late endosome  autophagosome  endoplasmic reticulum  cytosol  protein phosphorylation  ubiquitin-dependent protein catabolic process  autophagy  autophagy  apoptotic process  response to stress  protein localization  zinc ion binding  regulation of mitochondrion organization  endosomal transport  inclusion body  aggresome  macroautophagy  macroautophagy  positive regulation of macroautophagy  PML body  protein kinase binding  cell differentiation  receptor tyrosine kinase binding  cytoplasmic vesicle  ubiquitin protein ligase binding  intracellular signal transduction  SH2 domain binding  identical protein binding  protein homodimerization activity  positive regulation of apoptotic process  negative regulation of apoptotic process  regulation of I-kappaB kinase/NF-kappaB signaling  ubiquitin binding  ubiquitin binding  negative regulation of growth of symbiont in host  amphisome  autolysosome  positive regulation of transcription from RNA polymerase II promoter  regulation of Ras protein signal transduction  protein heterooligomerization  regulation of protein complex stability  extracellular exosome  K63-linked polyubiquitin binding  sperm midpiece  mitophagy in response to mitochondrial depolarization  mitophagy in response to mitochondrial depolarization  
Pathways : KEGGOsteoclast differentiation   
NDEx NetworkSQSTM1
Atlas of Cancer Signalling NetworkSQSTM1
Wikipedia pathwaysSQSTM1
Orthology - Evolution
OrthoDB8878
GeneTree (enSembl)ENSG00000161011
Phylogenetic Trees/Animal Genes : TreeFamSQSTM1
Homologs : HomoloGeneSQSTM1
Homology/Alignments : Family Browser (UCSC)SQSTM1
Gene fusions - Rearrangements
Fusion: TCGAARHGDIA 17q25.3 SQSTM1 5q35.3 HNSC SKCM
Fusion: TCGACYB561 17q23.3 SQSTM1 5q35.3 PRAD
Fusion: TCGAGPX3 5q33.1 SQSTM1 5q35.3 THCA
Fusion: TCGANCL 2q37.1 SQSTM1 5q35.3 LUAD
Fusion: TCGARPL18 19q13.33 SQSTM1 5q35.3 PRAD
Fusion: TCGASQSTM1 5q35.3 AP1G2 14q11.2 BRCA
Fusion: TCGASQSTM1 5q35.3 GRIA1 5q33.2 LUAD
Fusion: TCGASQSTM1 5q35.3 NTRK1 1q23.1 THCA
Polymorphisms : SNP, variants
NCBI Variation ViewerSQSTM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SQSTM1
dbVarSQSTM1
ClinVarSQSTM1
1000_GenomesSQSTM1 
Exome Variant ServerSQSTM1
ExAC (Exome Aggregation Consortium)SQSTM1 (select the gene name)
Genetic variants : HAPMAP8878
Genomic Variants (DGV)SQSTM1 [DGVbeta]
Mutations
ICGC Data PortalSQSTM1 
TCGA Data PortalSQSTM1 
Broad Tumor PortalSQSTM1
OASIS PortalSQSTM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSQSTM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SQSTM1
DgiDB (Drug Gene Interaction Database)SQSTM1
DoCM (Curated mutations)SQSTM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SQSTM1 (select a term)
intoGenSQSTM1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:179233388-179265077  ENSG00000161011
CONAN: Copy Number AnalysisSQSTM1 
Mutations and Diseases : HGMDSQSTM1
OMIM601530    602080    616437   
MedgenSQSTM1
Genetic Testing Registry SQSTM1
NextProtQ13501 [Medical]
TSGene8878
GENETestsSQSTM1
Huge Navigator SQSTM1 [HugePedia]
snp3D : Map Gene to Disease8878
BioCentury BCIQSQSTM1
ClinGenSQSTM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8878
Chemical/Pharm GKB GenePA36109
Clinical trialSQSTM1
Miscellaneous
canSAR (ICR)SQSTM1 (select the gene name)
Probes
Litterature
PubMed408 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSQSTM1
EVEXSQSTM1
GoPubMedSQSTM1
iHOPSQSTM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 19:14:51 CEST 2016
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