Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SRA1 (steroid receptor RNA activator 1)

Identity

Alias_namessteriod receptor RNA activator 1
Alias_symbol (synonym)SRA
STRAA1
Other aliasSRAP
pp7684
HGNC (Hugo) SRA1
LocusID (NCBI) 10011
Atlas_Id 45896
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140550067 and ends at 140558093 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRA1   11281
Cards
Entrez_Gene (NCBI)SRA1  10011  steroid receptor RNA activator 1
AliasesSRA; SRAP; STRAA1; pp7684
GeneCards (Weizmann)SRA1
Ensembl hg19 (Hinxton)ENSG00000213523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213523 [Gene_View]  chr5:140550067-140558093 [Contig_View]  SRA1 [Vega]
ICGC DataPortalENSG00000213523
TCGA cBioPortalSRA1
AceView (NCBI)SRA1
Genatlas (Paris)SRA1
WikiGenes10011
SOURCE (Princeton)SRA1
Genetics Home Reference (NIH)SRA1
Genomic and cartography
GoldenPath hg38 (UCSC)SRA1  -     chr5:140550067-140558093 -  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRA1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblSRA1 - 5q31.3 [CytoView hg19]  SRA1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBISRA1 [Mapview hg19]  SRA1 [Mapview hg38]
OMIM146110   603819   
Gene and transcription
Genbank (Entrez)AF092038 AF293024 AF293025 AF293026 AF318361
RefSeq transcript (Entrez)NM_001035235 NM_001253764
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRA1
Cluster EST : UnigeneHs.653135 [ NCBI ]
CGAP (NCI)Hs.653135
Alternative Splicing GalleryENSG00000213523
Gene ExpressionSRA1 [ NCBI-GEO ]   SRA1 [ EBI - ARRAY_EXPRESS ]   SRA1 [ SEEK ]   SRA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SRA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10011
GTEX Portal (Tissue expression)SRA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD15
Splice isoforms : SwissVarQ9HD15
PhosPhoSitePlusQ9HD15
Domains : Interpro (EBI)SRA1-protein/COPII_Sec31   
Domain families : Pfam (Sanger)SRA1 (PF07304)   
Domain families : Pfam (NCBI)pfam07304   
Conserved Domain (NCBI)SRA1
DMDM Disease mutations10011
Blocks (Seattle)SRA1
PDB (SRS)2MGX    4NBO   
PDB (PDBSum)2MGX    4NBO   
PDB (IMB)2MGX    4NBO   
PDB (RSDB)2MGX    4NBO   
Structural Biology KnowledgeBase2MGX    4NBO   
SCOP (Structural Classification of Proteins)2MGX    4NBO   
CATH (Classification of proteins structures)2MGX    4NBO   
SuperfamilyQ9HD15
Human Protein AtlasENSG00000213523
Peptide AtlasQ9HD15
HPRD18716
IPIIPI00102313   IPI00982177   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD15
IntAct (EBI)Q9HD15
FunCoupENSG00000213523
BioGRIDSRA1
STRING (EMBL)SRA1
ZODIACSRA1
Ontologies - Pathways
QuickGOQ9HD15
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  nucleoplasm  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  cell proliferation  microtubule cytoskeleton  cell differentiation  ligand-dependent nuclear receptor transcription coactivator activity  intracellular ribonucleoprotein complex  regulation of apoptotic process  intercellular bridge  positive regulation of receptor activity  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  nucleoplasm  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  apoptotic process  cell proliferation  microtubule cytoskeleton  cell differentiation  ligand-dependent nuclear receptor transcription coactivator activity  intracellular ribonucleoprotein complex  regulation of apoptotic process  intercellular bridge  positive regulation of receptor activity  
Pathways : BIOCARTACARM1 and Regulation of the Estrogen Receptor [Genes]    Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha) [Genes]   
NDEx NetworkSRA1
Atlas of Cancer Signalling NetworkSRA1
Wikipedia pathwaysSRA1
Orthology - Evolution
OrthoDB10011
GeneTree (enSembl)ENSG00000213523
Phylogenetic Trees/Animal Genes : TreeFamSRA1
HOVERGENQ9HD15
HOGENOMQ9HD15
Homologs : HomoloGeneSRA1
Homology/Alignments : Family Browser (UCSC)SRA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRA1
dbVarSRA1
ClinVarSRA1
1000_GenomesSRA1 
Exome Variant ServerSRA1
ExAC (Exome Aggregation Consortium)SRA1 (select the gene name)
Genetic variants : HAPMAP10011
Genomic Variants (DGV)SRA1 [DGVbeta]
DECIPHERSRA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRA1 
Mutations
ICGC Data PortalSRA1 
TCGA Data PortalSRA1 
Broad Tumor PortalSRA1
OASIS PortalSRA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRA1
DgiDB (Drug Gene Interaction Database)SRA1
DoCM (Curated mutations)SRA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRA1 (select a term)
intoGenSRA1
Cancer3DSRA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM146110    603819   
Orphanet
MedgenSRA1
Genetic Testing Registry SRA1
NextProtQ9HD15 [Medical]
TSGene10011
GENETestsSRA1
Huge Navigator SRA1 [HugePedia]
snp3D : Map Gene to Disease10011
BioCentury BCIQSRA1
ClinGenSRA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10011
Chemical/Pharm GKB GenePA36110
Clinical trialSRA1
Miscellaneous
canSAR (ICR)SRA1 (select the gene name)
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRA1
EVEXSRA1
GoPubMedSRA1
iHOPSRA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:00 CEST 2017

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