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SRARP (steroid receptor associated and regulated protein)

Identity

Other aliasC1orf64
ERRF
HGNC (Hugo) SRARP
LocusID (NCBI) 149563
Atlas_Id 56947
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16004236 and ends at 16006695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SRARP   28339
Cards
Entrez_Gene (NCBI)SRARP  149563  steroid receptor associated and regulated protein
AliasesC1orf64; ERRF
GeneCards (Weizmann)SRARP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:16004236-16006695 [Contig_View]  SRARP [Vega]
TCGA cBioPortalSRARP
AceView (NCBI)SRARP
Genatlas (Paris)SRARP
WikiGenes149563
SOURCE (Princeton)SRARP
Genetics Home Reference (NIH)SRARP
Genomic and cartography
GoldenPath hg38 (UCSC)SRARP  -     chr1:16004236-16006695 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRARP  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblSRARP - 1p36.13 [CytoView hg19]  SRARP - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBISRARP [Mapview hg19]  SRARP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI732325 AK127425 AW299952 BC017946 DA387602
RefSeq transcript (Entrez)NM_178840
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRARP
Cluster EST : UnigeneHs.29190 [ NCBI ]
CGAP (NCI)Hs.29190
Gene ExpressionSRARP [ NCBI-GEO ]   SRARP [ EBI - ARRAY_EXPRESS ]   SRARP [ SEEK ]   SRARP [ MEM ]
Gene Expression Viewer (FireBrowse)SRARP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149563
GTEX Portal (Tissue expression)SRARP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEQ6
Splice isoforms : SwissVarQ8NEQ6
PhosPhoSitePlusQ8NEQ6
Domains : Interpro (EBI)DUF4654   
Domain families : Pfam (Sanger)DUF4654 (PF15547)   
Domain families : Pfam (NCBI)pfam15547   
Conserved Domain (NCBI)SRARP
DMDM Disease mutations149563
Blocks (Seattle)SRARP
SuperfamilyQ8NEQ6
Peptide AtlasQ8NEQ6
IPIIPI00168716   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEQ6
IntAct (EBI)Q8NEQ6
BioGRIDSRARP
STRING (EMBL)SRARP
ZODIACSRARP
Ontologies - Pathways
QuickGOQ8NEQ6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSRARP
Atlas of Cancer Signalling NetworkSRARP
Wikipedia pathwaysSRARP
Orthology - Evolution
OrthoDB149563
Phylogenetic Trees/Animal Genes : TreeFamSRARP
HOVERGENQ8NEQ6
HOGENOMQ8NEQ6
Homologs : HomoloGeneSRARP
Homology/Alignments : Family Browser (UCSC)SRARP
Gene fusions - Rearrangements
Tumor Fusion PortalSRARP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRARP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRARP
dbVarSRARP
ClinVarSRARP
1000_GenomesSRARP 
Exome Variant ServerSRARP
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP149563
Genomic Variants (DGV)SRARP [DGVbeta]
DECIPHERSRARP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRARP 
Mutations
ICGC Data PortalSRARP 
TCGA Data PortalSRARP 
Broad Tumor PortalSRARP
OASIS PortalSRARP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSRARP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRARP
DgiDB (Drug Gene Interaction Database)SRARP
DoCM (Curated mutations)SRARP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRARP (select a term)
intoGenSRARP
Cancer3DSRARP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSRARP
MedgenSRARP
Genetic Testing Registry SRARP
NextProtQ8NEQ6 [Medical]
TSGene149563
GENETestsSRARP
Target ValidationSRARP
Huge Navigator SRARP [HugePedia]
snp3D : Map Gene to Disease149563
BioCentury BCIQSRARP
ClinGenSRARP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149563
Chemical/Pharm GKB GenePA142672514
Clinical trialSRARP
Miscellaneous
canSAR (ICR)SRARP (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRARP
EVEXSRARP
GoPubMedSRARP
iHOPSRARP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:36:26 CET 2017

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