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SRBD1 (S1 RNA binding domain 1)

Identity

Other names-
HGNC (Hugo) SRBD1
LocusID (NCBI) 55133
Location 2p21
Location_base_pair Starts at 45615819 and ends at 45838433 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)SRBD1   25521
Entrez_Gene (NCBI)SRBD1  55133  S1 RNA binding domain 1
Cards
GeneCards (Weizmann)SRBD1
Ensembl (Hinxton)ENSG00000068784 [Gene_View]  chr2:45615819-45838433 [Contig_View]  SRBD1 [Vega]
AceView (NCBI)SRBD1
Genatlas (Paris)SRBD1
SOURCE (Stanford)NM_018079
Genomic and cartography
GoldenPath (UCSC)SRBD1  -  2p21   chr2:45615819-45838433 -  2p21   [Description]    (hg19-Feb_2009)
EnsemblSRBD1 - 2p21 [CytoView]
Mapping of homologs : NCBISRBD1 [Mapview]
Gene and transcription
Genbank (Entrez)AK001241 AK055896 AK056536 AK301122 AK316222
RefSeq transcript (SRS)NM_018079
RefSeq transcript (Entrez)NM_018079
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_022184 NW_001838769 NW_004078005
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_022184 NW_001838769 NW_004078005
Consensus coding sequences : CCDS (NCBI)SRBD1
Cluster EST : UnigeneHs.14229 [ SRS ] Hs.14229 [ NCBI ]
CGAP (NCI)Hs.14229
Alternative Splicing : Fast-db (Paris)GSHG0017605
Alternative Splicing GalleryENSG00000068784
Gene ExpressionSRBD1 [ NCBI-GEO ]   SRBD1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5C6 (SRS) Q8N5C6 (Uniprot)
NextProtQ8N5C6
With graphics : InterProQ8N5C6
Splice isoforms : SwissVarQ8N5C6(Swissvar)
Domaine pattern : Prosite (SRS)S1 (PS50126)   
Domaine pattern : Prosite (Expaxy)S1 (PS50126)   
Domains : Interpro (SRS)NA-bd_OB-fold    NA-bd_OB-fold-like    Rbsml_prot_S1_RNA-bd_dom    RNA-binding_domain_S1    Tex-like_dom    Tex-like_HTH_dom    Tex-like_N    Tex_RuvX-like_dom    YqgF/RNaseH-like_dom   
Domains : Interpro (EBI)NA-bd_OB-fold    NA-bd_OB-fold-like    Rbsml_prot_S1_RNA-bd_dom    RNA-binding_domain_S1    Tex-like_dom    Tex-like_HTH_dom    Tex-like_N    Tex_RuvX-like_dom    YqgF/RNaseH-like_dom   
Related proteins : CluSTrQ8N5C6
Domain families : Pfam (SRS)S1 (PF00575)    Tex_N (PF09371)   
Domain families : Pfam (Sanger)S1 (PF00575)    Tex_N (PF09371)   
Domain families : Pfam (NCBI)pfam00575    pfam09371   
Domain families : Smart (EMBL)S1 (SM00316)  YqgFc (SM00732)  
DMDM55133
Blocks (Seattle)Q8N5C6
Human Protein AtlasENSG00000068784
HPRD07669
IPIIPI00171087   IPI00843788   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5C6
IntAct (EBI)Q8N5C6
FunCoupENSG00000068784
REACTOMESRBD1
Protein Interaction Database55133
BioGRIDSRBD1
InParanoidQ8N5C6
Interologous Interaction database Q8N5C6
IntegromeDBSRBD1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SRBD1
SNP (GeneSNP Utah)SRBD1
SNP : HGBaseSRBD1
Genetic variants : HAPMAPSRBD1
Somatic Mutations in Cancer : COSMICSRBD1 
CONAN: Copy Number AnalysisSRBD1 
Mutations and Diseases : HGMDSRBD1
OMIM
GENETests
Disease Genetic AssociationSRBD1
Huge Navigator SRBD1 [HugePedia]  SRBD1 [HugeCancerGEM]
Genomic VariantsSRBD1  SRBD1 [DGVbeta]
snp3D : Map Gene to Disease55133
General knowledge
Homologs : HomoloGeneSRBD1
Homology/Alignments : Family Browser (UCSC)SRBD1
Phylogenetic Trees/Animal Genes : TreeFamSRBD1
Chemical/Protein Interactions : CTD55133
Chemical/Pharm GKB GenePA144596269
Clinical trialSRBD1
Cancer Resource (Charite)ENSG00000068784
Ontology : AmiGORNA binding  nucleobase-containing compound metabolic process  hydrolase activity, acting on ester bonds  
Ontology : EGO-EBIRNA binding  nucleobase-containing compound metabolic process  hydrolase activity, acting on ester bonds  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneSRBD1
iHOPSRBD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:48 CEST 2013
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