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SREK1IP1 (SREK1 interacting protein 1)

Identity

Alias (NCBI)P18SRP
SFRS12IP1
HGNC (Hugo) SREK1IP1
HGNC Alias symbFLJ36754
P18SRP
HGNC Alias namep18 splicing regulatory protein
HGNC Previous nameSFRS12IP1
HGNC Previous nameSFRS12-interacting protein 1
 SREK1-interacting protein 1
LocusID (NCBI) 285672
Atlas_Id 74228
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 64718151 and ends at 64768691 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CALD1 (7q33) / SREK1IP1 (5q12.3)PLPP1 (5q11.2) / SREK1IP1 (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SREK1IP1   26716
Cards
Entrez_Gene (NCBI)SREK1IP1    SREK1 interacting protein 1
AliasesP18SRP; SFRS12IP1
GeneCards (Weizmann)SREK1IP1
Ensembl hg19 (Hinxton)ENSG00000153006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153006 [Gene_View]  ENSG00000153006 [Sequence]  chr5:64718151-64768691 [Contig_View]  SREK1IP1 [Vega]
ICGC DataPortalENSG00000153006
TCGA cBioPortalSREK1IP1
AceView (NCBI)SREK1IP1
Genatlas (Paris)SREK1IP1
SOURCE (Princeton)SREK1IP1
Genetics Home Reference (NIH)SREK1IP1
Genomic and cartography
GoldenPath hg38 (UCSC)SREK1IP1  -     chr5:64718151-64768691 -  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SREK1IP1  -     5q12.3   [Description]    (hg19-Feb_2009)
GoldenPathSREK1IP1 - 5q12.3 [CytoView hg19]  SREK1IP1 - 5q12.3 [CytoView hg38]
ImmunoBaseENSG00000153006
Genome Data Viewer NCBISREK1IP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK094073 AL832348 BC047006 BC108716 BC127085
RefSeq transcript (Entrez)NM_173829
Consensus coding sequences : CCDS (NCBI)SREK1IP1
Gene ExpressionSREK1IP1 [ NCBI-GEO ]   SREK1IP1 [ EBI - ARRAY_EXPRESS ]   SREK1IP1 [ SEEK ]   SREK1IP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SREK1IP1 [ Firebrowse - Broad ]
GenevisibleExpression of SREK1IP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285672
GTEX Portal (Tissue expression)SREK1IP1
Human Protein AtlasENSG00000153006-SREK1IP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9Q2
PhosPhoSitePlusQ8N9Q2
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SREK1IP1
SuperfamilyQ8N9Q2
AlphaFold pdb e-kbQ8N9Q2   
Human Protein Atlas [tissue]ENSG00000153006-SREK1IP1 [tissue]
HPRD08210
Protein Interaction databases
DIP (DOE-UCLA)Q8N9Q2
IntAct (EBI)Q8N9Q2
BioGRIDSREK1IP1
STRING (EMBL)SREK1IP1
ZODIACSREK1IP1
Ontologies - Pathways
QuickGOQ8N9Q2
Ontology : AmiGOnucleic acid binding  protein binding  mRNA processing  zinc ion binding  RNA splicing  
Ontology : EGO-EBInucleic acid binding  protein binding  mRNA processing  zinc ion binding  RNA splicing  
NDEx NetworkSREK1IP1
Atlas of Cancer Signalling NetworkSREK1IP1
Wikipedia pathwaysSREK1IP1
Orthology - Evolution
OrthoDB285672
GeneTree (enSembl)ENSG00000153006
Phylogenetic Trees/Animal Genes : TreeFamSREK1IP1
Homologs : HomoloGeneSREK1IP1
Homology/Alignments : Family Browser (UCSC)SREK1IP1
Gene fusions - Rearrangements
Fusion : QuiverSREK1IP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSREK1IP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SREK1IP1
dbVarSREK1IP1
ClinVarSREK1IP1
MonarchSREK1IP1
1000_GenomesSREK1IP1 
Exome Variant ServerSREK1IP1
GNOMAD BrowserENSG00000153006
Varsome BrowserSREK1IP1
ACMGSREK1IP1 variants
VarityQ8N9Q2
Genomic Variants (DGV)SREK1IP1 [DGVbeta]
DECIPHERSREK1IP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSREK1IP1 
Mutations
ICGC Data PortalSREK1IP1 
TCGA Data PortalSREK1IP1 
Broad Tumor PortalSREK1IP1
OASIS PortalSREK1IP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSREK1IP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSREK1IP1
Mutations and Diseases : HGMDSREK1IP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSREK1IP1
DgiDB (Drug Gene Interaction Database)SREK1IP1
DoCM (Curated mutations)SREK1IP1
CIViC (Clinical Interpretations of Variants in Cancer)SREK1IP1
Cancer3DSREK1IP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSREK1IP1
MedgenSREK1IP1
Genetic Testing Registry SREK1IP1
NextProtQ8N9Q2 [Medical]
GENETestsSREK1IP1
Target ValidationSREK1IP1
Huge Navigator SREK1IP1 [HugePedia]
ClinGenSREK1IP1
Clinical trials, drugs, therapy
MyCancerGenomeSREK1IP1
Protein Interactions : CTDSREK1IP1
Pharm GKB GenePA162402954
PharosQ8N9Q2
Clinical trialSREK1IP1
Miscellaneous
canSAR (ICR)SREK1IP1
HarmonizomeSREK1IP1
DataMed IndexSREK1IP1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSREK1IP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:24:09 CEST 2021

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