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SREK1IP1 (SREK1-interacting protein 1)

Identity

Alias_namesSFRS12IP1
SFRS12-interacting protein 1
SREK1-interacting protein 1
Alias_symbol (synonym)FLJ36754
P18SRP
Other alias
HGNC (Hugo) SREK1IP1
LocusID (NCBI) 285672
Atlas_Id 74228
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 64013978 and ends at 64064496 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CALD1 (7q33) / SREK1IP1 (5q12.3)PLPP1 (5q11.2) / SREK1IP1 (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SREK1IP1   26716
Cards
Entrez_Gene (NCBI)SREK1IP1  285672  SREK1-interacting protein 1
AliasesP18SRP; SFRS12IP1
GeneCards (Weizmann)SREK1IP1
Ensembl hg19 (Hinxton)ENSG00000153006 [Gene_View]  chr5:64013978-64064496 [Contig_View]  SREK1IP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000153006 [Gene_View]  chr5:64013978-64064496 [Contig_View]  SREK1IP1 [Vega]
ICGC DataPortalENSG00000153006
TCGA cBioPortalSREK1IP1
AceView (NCBI)SREK1IP1
Genatlas (Paris)SREK1IP1
WikiGenes285672
SOURCE (Princeton)SREK1IP1
Genetics Home Reference (NIH)SREK1IP1
Genomic and cartography
GoldenPath hg19 (UCSC)SREK1IP1  -     chr5:64013978-64064496 -  5q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SREK1IP1  -     5q12.3   [Description]    (hg38-Dec_2013)
EnsemblSREK1IP1 - 5q12.3 [CytoView hg19]  SREK1IP1 - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBISREK1IP1 [Mapview hg19]  SREK1IP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094073 AL832348 BC047006 BC108716 BC127085
RefSeq transcript (Entrez)NM_173829
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)SREK1IP1
Cluster EST : UnigeneHs.69504 [ NCBI ]
CGAP (NCI)Hs.69504
Alternative Splicing GalleryENSG00000153006
Gene ExpressionSREK1IP1 [ NCBI-GEO ]   SREK1IP1 [ EBI - ARRAY_EXPRESS ]   SREK1IP1 [ SEEK ]   SREK1IP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SREK1IP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285672
GTEX Portal (Tissue expression)SREK1IP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9Q2
Splice isoforms : SwissVarQ8N9Q2
PhosPhoSitePlusQ8N9Q2
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Znf_CCHC   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)SREK1IP1
DMDM Disease mutations285672
Blocks (Seattle)SREK1IP1
SuperfamilyQ8N9Q2
Human Protein AtlasENSG00000153006
Peptide AtlasQ8N9Q2
HPRD08210
IPIIPI00655613   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9Q2
IntAct (EBI)Q8N9Q2
FunCoupENSG00000153006
BioGRIDSREK1IP1
STRING (EMBL)SREK1IP1
ZODIACSREK1IP1
Ontologies - Pathways
QuickGOQ8N9Q2
Ontology : AmiGOnucleic acid binding  protein binding  mRNA processing  zinc ion binding  RNA splicing  
Ontology : EGO-EBInucleic acid binding  protein binding  mRNA processing  zinc ion binding  RNA splicing  
NDEx NetworkSREK1IP1
Atlas of Cancer Signalling NetworkSREK1IP1
Wikipedia pathwaysSREK1IP1
Orthology - Evolution
OrthoDB285672
GeneTree (enSembl)ENSG00000153006
Phylogenetic Trees/Animal Genes : TreeFamSREK1IP1
HOVERGENQ8N9Q2
HOGENOMQ8N9Q2
Homologs : HomoloGeneSREK1IP1
Homology/Alignments : Family Browser (UCSC)SREK1IP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSREK1IP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SREK1IP1
dbVarSREK1IP1
ClinVarSREK1IP1
1000_GenomesSREK1IP1 
Exome Variant ServerSREK1IP1
ExAC (Exome Aggregation Consortium)SREK1IP1 (select the gene name)
Genetic variants : HAPMAP285672
Genomic Variants (DGV)SREK1IP1 [DGVbeta]
DECIPHER (Syndromes)5:64013978-64064496  ENSG00000153006
CONAN: Copy Number AnalysisSREK1IP1 
Mutations
ICGC Data PortalSREK1IP1 
TCGA Data PortalSREK1IP1 
Broad Tumor PortalSREK1IP1
OASIS PortalSREK1IP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSREK1IP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSREK1IP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SREK1IP1
DgiDB (Drug Gene Interaction Database)SREK1IP1
DoCM (Curated mutations)SREK1IP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SREK1IP1 (select a term)
intoGenSREK1IP1
Cancer3DSREK1IP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSREK1IP1
Genetic Testing Registry SREK1IP1
NextProtQ8N9Q2 [Medical]
TSGene285672
GENETestsSREK1IP1
Huge Navigator SREK1IP1 [HugePedia]
snp3D : Map Gene to Disease285672
BioCentury BCIQSREK1IP1
ClinGenSREK1IP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285672
Chemical/Pharm GKB GenePA162402954
Clinical trialSREK1IP1
Miscellaneous
canSAR (ICR)SREK1IP1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSREK1IP1
EVEXSREK1IP1
GoPubMedSREK1IP1
iHOPSREK1IP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:39 CET 2017

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