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SRFBP1 (serum response factor binding protein 1)

Identity

Alias_symbol (synonym)FLJ25286
p49
STRAP
BUD22
Rlb1
Other aliasP49
p49/STRAP
HGNC (Hugo) SRFBP1
LocusID (NCBI) 153443
Atlas_Id 74229
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 121961961 and ends at 122028600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRFBP1 (5q23.1) / SRFBP1 (5q23.1)STK11 (19p13.3) / SRFBP1 (5q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRFBP1   26333
Cards
Entrez_Gene (NCBI)SRFBP1  153443  serum response factor binding protein 1
AliasesBUD22; P49; Rlb1; STRAP; 
p49/STRAP
GeneCards (Weizmann)SRFBP1
Ensembl hg19 (Hinxton)ENSG00000151304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151304 [Gene_View]  chr5:121961961-122028600 [Contig_View]  SRFBP1 [Vega]
ICGC DataPortalENSG00000151304
TCGA cBioPortalSRFBP1
AceView (NCBI)SRFBP1
Genatlas (Paris)SRFBP1
WikiGenes153443
SOURCE (Princeton)SRFBP1
Genetics Home Reference (NIH)SRFBP1
Genomic and cartography
GoldenPath hg38 (UCSC)SRFBP1  -     chr5:121961961-122028600 +  5q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRFBP1  -     5q23.1   [Description]    (hg19-Feb_2009)
EnsemblSRFBP1 - 5q23.1 [CytoView hg19]  SRFBP1 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBISRFBP1 [Mapview hg19]  SRFBP1 [Mapview hg38]
OMIM610479   
Gene and transcription
Genbank (Entrez)AK058015 AY611630 BC017102 BC031222 BG193119
RefSeq transcript (Entrez)NM_152546
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRFBP1
Cluster EST : UnigeneHs.107622 [ NCBI ]
CGAP (NCI)Hs.107622
Alternative Splicing GalleryENSG00000151304
Gene ExpressionSRFBP1 [ NCBI-GEO ]   SRFBP1 [ EBI - ARRAY_EXPRESS ]   SRFBP1 [ SEEK ]   SRFBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SRFBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153443
GTEX Portal (Tissue expression)SRFBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEF9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEF9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEF9
Splice isoforms : SwissVarQ8NEF9
PhosPhoSitePlusQ8NEF9
Domains : Interpro (EBI)Bud22/SRFB1   
Domain families : Pfam (Sanger)BUD22 (PF09073)   
Domain families : Pfam (NCBI)pfam09073   
Conserved Domain (NCBI)SRFBP1
DMDM Disease mutations153443
Blocks (Seattle)SRFBP1
SuperfamilyQ8NEF9
Human Protein AtlasENSG00000151304
Peptide AtlasQ8NEF9
HPRD08685
IPIIPI00304493   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEF9
IntAct (EBI)Q8NEF9
FunCoupENSG00000151304
BioGRIDSRFBP1
STRING (EMBL)SRFBP1
ZODIACSRFBP1
Ontologies - Pathways
QuickGOQ8NEF9
Ontology : AmiGORNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  maturation of SSU-rRNA  90S preribosome  perinuclear region of cytoplasm  
Ontology : EGO-EBIRNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  maturation of SSU-rRNA  90S preribosome  perinuclear region of cytoplasm  
NDEx NetworkSRFBP1
Atlas of Cancer Signalling NetworkSRFBP1
Wikipedia pathwaysSRFBP1
Orthology - Evolution
OrthoDB153443
GeneTree (enSembl)ENSG00000151304
Phylogenetic Trees/Animal Genes : TreeFamSRFBP1
HOVERGENQ8NEF9
HOGENOMQ8NEF9
Homologs : HomoloGeneSRFBP1
Homology/Alignments : Family Browser (UCSC)SRFBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRFBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRFBP1
dbVarSRFBP1
ClinVarSRFBP1
1000_GenomesSRFBP1 
Exome Variant ServerSRFBP1
ExAC (Exome Aggregation Consortium)SRFBP1 (select the gene name)
Genetic variants : HAPMAP153443
Genomic Variants (DGV)SRFBP1 [DGVbeta]
DECIPHERSRFBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRFBP1 
Mutations
ICGC Data PortalSRFBP1 
TCGA Data PortalSRFBP1 
Broad Tumor PortalSRFBP1
OASIS PortalSRFBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRFBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRFBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRFBP1
DgiDB (Drug Gene Interaction Database)SRFBP1
DoCM (Curated mutations)SRFBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRFBP1 (select a term)
intoGenSRFBP1
Cancer3DSRFBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610479   
Orphanet
MedgenSRFBP1
Genetic Testing Registry SRFBP1
NextProtQ8NEF9 [Medical]
TSGene153443
GENETestsSRFBP1
Huge Navigator SRFBP1 [HugePedia]
snp3D : Map Gene to Disease153443
BioCentury BCIQSRFBP1
ClinGenSRFBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153443
Chemical/Pharm GKB GenePA142670870
Clinical trialSRFBP1
Miscellaneous
canSAR (ICR)SRFBP1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRFBP1
EVEXSRFBP1
GoPubMedSRFBP1
iHOPSRFBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:56:37 CEST 2017

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