Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SRL (sarcalumenin)

Identity

Other alias-
HGNC (Hugo) SRL
LocusID (NCBI) 6345
Atlas_Id 74234
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4189374 and ends at 4242080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADCY9 (16p13.3) / SRL (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRL   11295
Cards
Entrez_Gene (NCBI)SRL  6345  sarcalumenin
Aliases
GeneCards (Weizmann)SRL
Ensembl hg19 (Hinxton)ENSG00000185739 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185739 [Gene_View]  chr16:4189374-4242080 [Contig_View]  SRL [Vega]
ICGC DataPortalENSG00000185739
TCGA cBioPortalSRL
AceView (NCBI)SRL
Genatlas (Paris)SRL
WikiGenes6345
SOURCE (Princeton)SRL
Genetics Home Reference (NIH)SRL
Genomic and cartography
GoldenPath hg38 (UCSC)SRL  -     chr16:4189374-4242080 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRL  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSRL - 16p13.3 [CytoView hg19]  SRL - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISRL [Mapview hg19]  SRL [Mapview hg38]
OMIM604992   
Gene and transcription
Genbank (Entrez)AK056588 AK302601 AL831973 AL832361 BC160181
RefSeq transcript (Entrez)NM_001098814 NM_001323667 NM_001323668
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRL
Cluster EST : UnigeneHs.10041 [ NCBI ]
CGAP (NCI)Hs.10041
Alternative Splicing GalleryENSG00000185739
Gene ExpressionSRL [ NCBI-GEO ]   SRL [ EBI - ARRAY_EXPRESS ]   SRL [ SEEK ]   SRL [ MEM ]
Gene Expression Viewer (FireBrowse)SRL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6345
GTEX Portal (Tissue expression)SRL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TD4
Splice isoforms : SwissVarQ86TD4
PhosPhoSitePlusQ86TD4
Domaine pattern : Prosite (Expaxy)G_DYNAMIN_2 (PS51718)   
Domains : Interpro (EBI)Dynamin_SF    EHD_N    G_DYNAMIN_dom    P-loop_NTPase   
Domain families : Pfam (Sanger)Dynamin_N (PF00350)    EHD_N (PF16880)   
Domain families : Pfam (NCBI)pfam00350    pfam16880   
Conserved Domain (NCBI)SRL
DMDM Disease mutations6345
Blocks (Seattle)SRL
SuperfamilyQ86TD4
Human Protein AtlasENSG00000185739
Peptide AtlasQ86TD4
IPIIPI00658052   IPI00328534   IPI01010935   
Protein Interaction databases
DIP (DOE-UCLA)Q86TD4
IntAct (EBI)Q86TD4
FunCoupENSG00000185739
BioGRIDSRL
STRING (EMBL)SRL
ZODIACSRL
Ontologies - Pathways
QuickGOQ86TD4
Ontology : AmiGOGTP binding  sarcoplasmic reticulum lumen  
Ontology : EGO-EBIGTP binding  sarcoplasmic reticulum lumen  
NDEx NetworkSRL
Atlas of Cancer Signalling NetworkSRL
Wikipedia pathwaysSRL
Orthology - Evolution
OrthoDB6345
GeneTree (enSembl)ENSG00000185739
Phylogenetic Trees/Animal Genes : TreeFamSRL
HOVERGENQ86TD4
HOGENOMQ86TD4
Homologs : HomoloGeneSRL
Homology/Alignments : Family Browser (UCSC)SRL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRL
dbVarSRL
ClinVarSRL
1000_GenomesSRL 
Exome Variant ServerSRL
ExAC (Exome Aggregation Consortium)SRL (select the gene name)
Genetic variants : HAPMAP6345
Genomic Variants (DGV)SRL [DGVbeta]
DECIPHERSRL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRL 
Mutations
ICGC Data PortalSRL 
TCGA Data PortalSRL 
Broad Tumor PortalSRL
OASIS PortalSRL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRL
DgiDB (Drug Gene Interaction Database)SRL
DoCM (Curated mutations)SRL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRL (select a term)
intoGenSRL
Cancer3DSRL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604992   
Orphanet
MedgenSRL
Genetic Testing Registry SRL
NextProtQ86TD4 [Medical]
TSGene6345
GENETestsSRL
Target ValidationSRL
Huge Navigator SRL [HugePedia]
snp3D : Map Gene to Disease6345
BioCentury BCIQSRL
ClinGenSRL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6345
Chemical/Pharm GKB GenePA36119
Clinical trialSRL
Miscellaneous
canSAR (ICR)SRL (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRL
EVEXSRL
GoPubMedSRL
iHOPSRL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:09 CEST 2017

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