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SRP19 (signal recognition particle 19)

Identity

Other alias-
HGNC (Hugo) SRP19
LocusID (NCBI) 6728
Atlas_Id 56668
Location 5q22.2  [Link to chromosome band 5q22]
Location_base_pair Starts at 112861188 and ends at 112868392 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRP19 (5q22.2) / ATAD5 (17q11.2)THOC1 (18p11.32) / SRP19 (5q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRP19   11300
Cards
Entrez_Gene (NCBI)SRP19  6728  signal recognition particle 19
Aliases
GeneCards (Weizmann)SRP19
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:112861188-112868392 [Contig_View]  SRP19 [Vega]
TCGA cBioPortalSRP19
AceView (NCBI)SRP19
Genatlas (Paris)SRP19
WikiGenes6728
SOURCE (Princeton)SRP19
Genetics Home Reference (NIH)SRP19
Genomic and cartography
GoldenPath hg38 (UCSC)SRP19  -     chr5:112861188-112868392 +  5q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRP19  -     5q22.2   [Description]    (hg19-Feb_2009)
EnsemblSRP19 - 5q22.2 [CytoView hg19]  SRP19 - 5q22.2 [CytoView hg38]
Mapping of homologs : NCBISRP19 [Mapview hg19]  SRP19 [Mapview hg38]
OMIM182175   
Gene and transcription
Genbank (Entrez)AA845342 AK311803 AW890522 BC000186 BC010947
RefSeq transcript (Entrez)NM_001204193 NM_001204194 NM_001204196 NM_001204199 NM_003135
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRP19
Cluster EST : UnigeneHs.637001 [ NCBI ]
CGAP (NCI)Hs.637001
Gene ExpressionSRP19 [ NCBI-GEO ]   SRP19 [ EBI - ARRAY_EXPRESS ]   SRP19 [ SEEK ]   SRP19 [ MEM ]
Gene Expression Viewer (FireBrowse)SRP19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6728
GTEX Portal (Tissue expression)SRP19
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09132   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09132  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09132
Splice isoforms : SwissVarP09132
PhosPhoSitePlusP09132
Domains : Interpro (EBI)Signal_recog_particle_SRP19   
Domain families : Pfam (Sanger)SRP19 (PF01922)   
Domain families : Pfam (NCBI)pfam01922   
Conserved Domain (NCBI)SRP19
DMDM Disease mutations6728
Blocks (Seattle)SRP19
PDB (SRS)1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
PDB (PDBSum)1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
PDB (IMB)1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
PDB (RSDB)1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
Structural Biology KnowledgeBase1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
SCOP (Structural Classification of Proteins)1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
CATH (Classification of proteins structures)1JID    1MFQ    1RY1    2J37    3KTV    4P3E    5M73   
SuperfamilyP09132
Peptide AtlasP09132
IPIIPI00295889   IPI00964948   IPI00980207   IPI00964362   IPI00967730   IPI00967461   IPI00807414   
Protein Interaction databases
DIP (DOE-UCLA)P09132
IntAct (EBI)P09132
BioGRIDSRP19
STRING (EMBL)SRP19
ZODIACSRP19
Ontologies - Pathways
QuickGOP09132
Ontology : AmiGORNA binding  nucleolus  signal recognition particle, endoplasmic reticulum targeting  cytosol  cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition  7S RNA binding  response to drug  ribosome binding  signal recognition particle  
Ontology : EGO-EBIRNA binding  nucleolus  signal recognition particle, endoplasmic reticulum targeting  cytosol  cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition  7S RNA binding  response to drug  ribosome binding  signal recognition particle  
Pathways : KEGGProtein export   
NDEx NetworkSRP19
Atlas of Cancer Signalling NetworkSRP19
Wikipedia pathwaysSRP19
Orthology - Evolution
OrthoDB6728
Phylogenetic Trees/Animal Genes : TreeFamSRP19
HOVERGENP09132
HOGENOMP09132
Homologs : HomoloGeneSRP19
Homology/Alignments : Family Browser (UCSC)SRP19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRP19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRP19
dbVarSRP19
ClinVarSRP19
1000_GenomesSRP19 
Exome Variant ServerSRP19
ExAC (Exome Aggregation Consortium)SRP19 (select the gene name)
Genetic variants : HAPMAP6728
Genomic Variants (DGV)SRP19 [DGVbeta]
DECIPHERSRP19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRP19 
Mutations
ICGC Data PortalSRP19 
TCGA Data PortalSRP19 
Broad Tumor PortalSRP19
OASIS PortalSRP19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRP19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRP19
BioMutasearch SRP19
DgiDB (Drug Gene Interaction Database)SRP19
DoCM (Curated mutations)SRP19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRP19 (select a term)
intoGenSRP19
Cancer3DSRP19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182175   
Orphanet
MedgenSRP19
Genetic Testing Registry SRP19
NextProtP09132 [Medical]
TSGene6728
GENETestsSRP19
Target ValidationSRP19
Huge Navigator SRP19 [HugePedia]
snp3D : Map Gene to Disease6728
BioCentury BCIQSRP19
ClinGenSRP19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6728
Chemical/Pharm GKB GenePA36124
Clinical trialSRP19
Miscellaneous
canSAR (ICR)SRP19 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRP19
EVEXSRP19
GoPubMedSRP19
iHOPSRP19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:00 CEST 2017

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