Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SRP72 (signal recognition particle 72)

Identity

Other aliasBMFF
BMFS1
HEL103
HGNC (Hugo) SRP72
LocusID (NCBI) 6731
Atlas_Id 56663
Location 4q12  [Link to chromosome band 4q12]
Location_base_pair Starts at 56467596 and ends at 56503681 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMK2G (10q22.2) / SRP72 (4q12)OXSR1 (3p22.2) / SRP72 (4q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRP72   11303
Cards
Entrez_Gene (NCBI)SRP72  6731  signal recognition particle 72
AliasesBMFF; BMFS1; HEL103
GeneCards (Weizmann)SRP72
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:56467596-56503681 [Contig_View]  SRP72 [Vega]
TCGA cBioPortalSRP72
AceView (NCBI)SRP72
Genatlas (Paris)SRP72
WikiGenes6731
SOURCE (Princeton)SRP72
Genetics Home Reference (NIH)SRP72
Genomic and cartography
GoldenPath hg38 (UCSC)SRP72  -     chr4:56467596-56503681 +  4q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRP72  -     4q12   [Description]    (hg19-Feb_2009)
EnsemblSRP72 - 4q12 [CytoView hg19]  SRP72 - 4q12 [CytoView hg38]
Mapping of homologs : NCBISRP72 [Mapview hg19]  SRP72 [Mapview hg38]
OMIM602122   614675   
Gene and transcription
Genbank (Entrez)AF038851 AF069765 AF077019 AF086131 AF086530
RefSeq transcript (Entrez)NM_001267722 NM_006947
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRP72
Cluster EST : UnigeneHs.237825 [ NCBI ]
CGAP (NCI)Hs.237825
Gene ExpressionSRP72 [ NCBI-GEO ]   SRP72 [ EBI - ARRAY_EXPRESS ]   SRP72 [ SEEK ]   SRP72 [ MEM ]
Gene Expression Viewer (FireBrowse)SRP72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6731
GTEX Portal (Tissue expression)SRP72
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76094   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76094  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76094
Splice isoforms : SwissVarO76094
PhosPhoSitePlusO76094
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Signal_recog_part_SRP72_RNA-bd    SRP72    SRP_TPR-like    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)SRP72 (PF08492)    SRP_TPR_like (PF17004)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam08492    pfam17004    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)SRP72
DMDM Disease mutations6731
Blocks (Seattle)SRP72
PDB (SRS)5M72    5M73   
PDB (PDBSum)5M72    5M73   
PDB (IMB)5M72    5M73   
PDB (RSDB)5M72    5M73   
Structural Biology KnowledgeBase5M72    5M73   
SCOP (Structural Classification of Proteins)5M72    5M73   
CATH (Classification of proteins structures)5M72    5M73   
SuperfamilyO76094
Peptide AtlasO76094
IPIIPI00215888   IPI00966466   IPI00966751   
Protein Interaction databases
DIP (DOE-UCLA)O76094
IntAct (EBI)O76094
BioGRIDSRP72
STRING (EMBL)SRP72
ZODIACSRP72
Ontologies - Pathways
QuickGOO76094
Ontology : AmiGORNA binding  signal recognition particle binding  protein binding  endoplasmic reticulum  signal recognition particle, endoplasmic reticulum targeting  cytosol  SRP-dependent cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  7S RNA binding  TPR domain binding  response to drug  ribosome binding  signal recognition particle  
Ontology : EGO-EBIRNA binding  signal recognition particle binding  protein binding  endoplasmic reticulum  signal recognition particle, endoplasmic reticulum targeting  cytosol  SRP-dependent cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  7S RNA binding  TPR domain binding  response to drug  ribosome binding  signal recognition particle  
Pathways : KEGGProtein export   
NDEx NetworkSRP72
Atlas of Cancer Signalling NetworkSRP72
Wikipedia pathwaysSRP72
Orthology - Evolution
OrthoDB6731
Phylogenetic Trees/Animal Genes : TreeFamSRP72
HOVERGENO76094
HOGENOMO76094
Homologs : HomoloGeneSRP72
Homology/Alignments : Family Browser (UCSC)SRP72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRP72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRP72
dbVarSRP72
ClinVarSRP72
1000_GenomesSRP72 
Exome Variant ServerSRP72
ExAC (Exome Aggregation Consortium)SRP72 (select the gene name)
Genetic variants : HAPMAP6731
Genomic Variants (DGV)SRP72 [DGVbeta]
DECIPHERSRP72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRP72 
Mutations
ICGC Data PortalSRP72 
TCGA Data PortalSRP72 
Broad Tumor PortalSRP72
OASIS PortalSRP72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRP72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRP72
BioMutasearch SRP72
DgiDB (Drug Gene Interaction Database)SRP72
DoCM (Curated mutations)SRP72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRP72 (select a term)
intoGenSRP72
Cancer3DSRP72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602122    614675   
Orphanet
MedgenSRP72
Genetic Testing Registry SRP72
NextProtO76094 [Medical]
TSGene6731
GENETestsSRP72
Target ValidationSRP72
Huge Navigator SRP72 [HugePedia]
snp3D : Map Gene to Disease6731
BioCentury BCIQSRP72
ClinGenSRP72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6731
Chemical/Pharm GKB GenePA36127
Clinical trialSRP72
Miscellaneous
canSAR (ICR)SRP72 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRP72
EVEXSRP72
GoPubMedSRP72
iHOPSRP72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:15:40 CEST 2017

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