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SRP9 (signal recognition particle 9)

Identity

Alias_namessignal recognition particle 9kDa
Other aliasALURBP
HGNC (Hugo) SRP9
LocusID (NCBI) 6726
Atlas_Id 50446
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 225777813 and ends at 225790466 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBM25 (14q24.2) / SRP9 (1q42.12)SRP9 (1q42.12) / EPHX1 (1q42.12)SRP9 (1q42.12) / FGF12 (3q28)
SRP9 (1q42.12) / RPS8 (1p34.1)SRP9 (1q42.12) / WAPL (10q23.2)UBE2V1 (20q13.13) / SRP9 (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRP9   11304
Cards
Entrez_Gene (NCBI)SRP9  6726  signal recognition particle 9
AliasesALURBP
GeneCards (Weizmann)SRP9
Ensembl hg19 (Hinxton)ENSG00000143742 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143742 [Gene_View]  chr1:225777813-225790466 [Contig_View]  SRP9 [Vega]
ICGC DataPortalENSG00000143742
TCGA cBioPortalSRP9
AceView (NCBI)SRP9
Genatlas (Paris)SRP9
WikiGenes6726
SOURCE (Princeton)SRP9
Genetics Home Reference (NIH)SRP9
Genomic and cartography
GoldenPath hg38 (UCSC)SRP9  -     chr1:225777813-225790466 +  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRP9  -     1q42.12   [Description]    (hg19-Feb_2009)
EnsemblSRP9 - 1q42.12 [CytoView hg19]  SRP9 - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBISRP9 [Mapview hg19]  SRP9 [Mapview hg38]
OMIM600707   
Gene and transcription
Genbank (Entrez)AF070649 AK289595 AL050363 BC008443 BC015094
RefSeq transcript (Entrez)NM_001130440 NM_003133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRP9
Cluster EST : UnigeneHs.706900 [ NCBI ]
CGAP (NCI)Hs.706900
Alternative Splicing GalleryENSG00000143742
Gene ExpressionSRP9 [ NCBI-GEO ]   SRP9 [ EBI - ARRAY_EXPRESS ]   SRP9 [ SEEK ]   SRP9 [ MEM ]
Gene Expression Viewer (FireBrowse)SRP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6726
GTEX Portal (Tissue expression)SRP9
Human Protein AtlasENSG00000143742-SRP9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49458   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49458  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49458
Splice isoforms : SwissVarP49458
PhosPhoSitePlusP49458
Domains : Interpro (EBI)Signal_recog_particle_SRP9    Signal_recog_particle_SRP9/14   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SRP9
DMDM Disease mutations6726
Blocks (Seattle)SRP9
PDB (SRS)1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
PDB (PDBSum)1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
PDB (IMB)1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
PDB (RSDB)1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
Structural Biology KnowledgeBase1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
SCOP (Structural Classification of Proteins)1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
CATH (Classification of proteins structures)1E8O    1E8S    1RY1    4UYJ    4UYK    5AOX   
SuperfamilyP49458
Human Protein Atlas [tissue]ENSG00000143742-SRP9 [tissue]
Peptide AtlasP49458
HPRD02830
IPIIPI00642816   IPI00216125   IPI00419797   
Protein Interaction databases
DIP (DOE-UCLA)P49458
IntAct (EBI)P49458
FunCoupENSG00000143742
BioGRIDSRP9
STRING (EMBL)SRP9
ZODIACSRP9
Ontologies - Pathways
QuickGOP49458
Ontology : AmiGORNA binding  signal recognition particle binding  protein binding  signal recognition particle receptor complex  signal recognition particle, endoplasmic reticulum targeting  signal recognition particle, endoplasmic reticulum targeting  cytosol  SRP-dependent cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  7S RNA binding  negative regulation of translational elongation  extracellular exosome  
Ontology : EGO-EBIRNA binding  signal recognition particle binding  protein binding  signal recognition particle receptor complex  signal recognition particle, endoplasmic reticulum targeting  signal recognition particle, endoplasmic reticulum targeting  cytosol  SRP-dependent cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  7S RNA binding  negative regulation of translational elongation  extracellular exosome  
Pathways : KEGGProtein export   
NDEx NetworkSRP9
Atlas of Cancer Signalling NetworkSRP9
Wikipedia pathwaysSRP9
Orthology - Evolution
OrthoDB6726
GeneTree (enSembl)ENSG00000143742
Phylogenetic Trees/Animal Genes : TreeFamSRP9
HOVERGENP49458
HOGENOMP49458
Homologs : HomoloGeneSRP9
Homology/Alignments : Family Browser (UCSC)SRP9
Gene fusions - Rearrangements
Tumor Fusion PortalSRP9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRP9
dbVarSRP9
ClinVarSRP9
1000_GenomesSRP9 
Exome Variant ServerSRP9
ExAC (Exome Aggregation Consortium)ENSG00000143742
GNOMAD BrowserENSG00000143742
Genetic variants : HAPMAP6726
Genomic Variants (DGV)SRP9 [DGVbeta]
DECIPHERSRP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRP9 
Mutations
ICGC Data PortalSRP9 
TCGA Data PortalSRP9 
Broad Tumor PortalSRP9
OASIS PortalSRP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRP9
DgiDB (Drug Gene Interaction Database)SRP9
DoCM (Curated mutations)SRP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRP9 (select a term)
intoGenSRP9
Cancer3DSRP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600707   
Orphanet
DisGeNETSRP9
MedgenSRP9
Genetic Testing Registry SRP9
NextProtP49458 [Medical]
TSGene6726
GENETestsSRP9
Target ValidationSRP9
Huge Navigator SRP9 [HugePedia]
snp3D : Map Gene to Disease6726
BioCentury BCIQSRP9
ClinGenSRP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6726
Chemical/Pharm GKB GenePA36128
Clinical trialSRP9
Miscellaneous
canSAR (ICR)SRP9 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRP9
EVEXSRP9
GoPubMedSRP9
iHOPSRP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:36:31 CET 2017

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