Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SRPX (sushi repeat containing protein, X-linked)

Identity

Alias_namessushi-repeat-containing protein, X chromosome
sushi-repeat-containing protein, X-linked
Alias_symbol (synonym)ETX1
Other aliasDRS
HEL-S-83p
SRPX1
HGNC (Hugo) SRPX
LocusID (NCBI) 8406
Atlas_Id 42391
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 38008588 and ends at 38080177 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRPX   11309
Cards
Entrez_Gene (NCBI)SRPX  8406  sushi repeat containing protein, X-linked
AliasesDRS; ETX1; HEL-S-83p; SRPX1
GeneCards (Weizmann)SRPX
Ensembl hg19 (Hinxton)ENSG00000101955 [Gene_View]  chrX:38008588-38080177 [Contig_View]  SRPX [Vega]
Ensembl hg38 (Hinxton)ENSG00000101955 [Gene_View]  chrX:38008588-38080177 [Contig_View]  SRPX [Vega]
ICGC DataPortalENSG00000101955
TCGA cBioPortalSRPX
AceView (NCBI)SRPX
Genatlas (Paris)SRPX
WikiGenes8406
SOURCE (Princeton)SRPX
Genetics Home Reference (NIH)SRPX
Genomic and cartography
GoldenPath hg19 (UCSC)SRPX  -     chrX:38008588-38080177 -  Xp11.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SRPX  -     Xp11.4   [Description]    (hg38-Dec_2013)
EnsemblSRPX - Xp11.4 [CytoView hg19]  SRPX - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBISRPX [Mapview hg19]  SRPX [Mapview hg38]
OMIM300187   
Gene and transcription
Genbank (Entrez)AK125542 AK289430 AK293127 AK298802 BC020684
RefSeq transcript (Entrez)NM_001170750 NM_001170751 NM_001170752 NM_006307
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016373 NT_079573 NW_004929439
Consensus coding sequences : CCDS (NCBI)SRPX
Cluster EST : UnigeneHs.15154 [ NCBI ]
CGAP (NCI)Hs.15154
Alternative Splicing GalleryENSG00000101955
Gene ExpressionSRPX [ NCBI-GEO ]   SRPX [ EBI - ARRAY_EXPRESS ]   SRPX [ SEEK ]   SRPX [ MEM ]
Gene Expression Viewer (FireBrowse)SRPX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8406
GTEX Portal (Tissue expression)SRPX
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78539   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78539  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78539
Splice isoforms : SwissVarP78539
PhosPhoSitePlusP78539
Domaine pattern : Prosite (Expaxy)HYR (PS50825)    SUSHI (PS50923)   
Domains : Interpro (EBI)DUF4174    HYR_dom    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)DUF4174 (PF13778)    HYR (PF02494)    Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam13778    pfam02494    pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)SRPX
DMDM Disease mutations8406
Blocks (Seattle)SRPX
SuperfamilyP78539
Human Protein AtlasENSG00000101955
Peptide AtlasP78539
HPRD02175
IPIIPI00289795   IPI00215899   IPI00902601   IPI00910459   IPI00955050   
Protein Interaction databases
DIP (DOE-UCLA)P78539
IntAct (EBI)P78539
FunCoupENSG00000101955
BioGRIDSRPX
STRING (EMBL)SRPX
ZODIACSRPX
Ontologies - Pathways
QuickGOP78539
Ontology : AmiGOphagolysosome assembly  autophagosome  endoplasmic reticulum  autophagy  cell adhesion  cell surface  membrane  response to endoplasmic reticulum stress  negative regulation of cell proliferation involved in contact inhibition  positive regulation of extrinsic apoptotic signaling pathway in absence of ligand  
Ontology : EGO-EBIphagolysosome assembly  autophagosome  endoplasmic reticulum  autophagy  cell adhesion  cell surface  membrane  response to endoplasmic reticulum stress  negative regulation of cell proliferation involved in contact inhibition  positive regulation of extrinsic apoptotic signaling pathway in absence of ligand  
NDEx NetworkSRPX
Atlas of Cancer Signalling NetworkSRPX
Wikipedia pathwaysSRPX
Orthology - Evolution
OrthoDB8406
GeneTree (enSembl)ENSG00000101955
Phylogenetic Trees/Animal Genes : TreeFamSRPX
HOVERGENP78539
HOGENOMP78539
Homologs : HomoloGeneSRPX
Homology/Alignments : Family Browser (UCSC)SRPX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRPX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRPX
dbVarSRPX
ClinVarSRPX
1000_GenomesSRPX 
Exome Variant ServerSRPX
ExAC (Exome Aggregation Consortium)SRPX (select the gene name)
Genetic variants : HAPMAP8406
Genomic Variants (DGV)SRPX [DGVbeta]
DECIPHER (Syndromes)X:38008588-38080177  ENSG00000101955
CONAN: Copy Number AnalysisSRPX 
Mutations
ICGC Data PortalSRPX 
TCGA Data PortalSRPX 
Broad Tumor PortalSRPX
OASIS PortalSRPX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRPX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRPX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SRPX
DgiDB (Drug Gene Interaction Database)SRPX
DoCM (Curated mutations)SRPX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRPX (select a term)
intoGenSRPX
Cancer3DSRPX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300187   
Orphanet
MedgenSRPX
Genetic Testing Registry SRPX
NextProtP78539 [Medical]
TSGene8406
GENETestsSRPX
Huge Navigator SRPX [HugePedia]
snp3D : Map Gene to Disease8406
BioCentury BCIQSRPX
ClinGenSRPX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8406
Chemical/Pharm GKB GenePA36133
Clinical trialSRPX
Miscellaneous
canSAR (ICR)SRPX (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRPX
EVEXSRPX
GoPubMedSRPX
iHOPSRPX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:20:51 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.