Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SRPX2 (sushi repeat containing protein, X-linked 2)

Identity

Alias_namessushi-repeat-containing protein
Alias_symbol (synonym)SRPUL
Other aliasBPP
CBPS
PMGX
RESDX
HGNC (Hugo) SRPX2
LocusID (NCBI) 27286
Atlas_Id 50677
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 100644166 and ends at 100671299 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRPX2   30668
Cards
Entrez_Gene (NCBI)SRPX2  27286  sushi repeat containing protein, X-linked 2
AliasesBPP; CBPS; PMGX; RESDX; 
SRPUL
GeneCards (Weizmann)SRPX2
Ensembl hg19 (Hinxton)ENSG00000102359 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102359 [Gene_View]  chrX:100644166-100671299 [Contig_View]  SRPX2 [Vega]
ICGC DataPortalENSG00000102359
TCGA cBioPortalSRPX2
AceView (NCBI)SRPX2
Genatlas (Paris)SRPX2
WikiGenes27286
SOURCE (Princeton)SRPX2
Genetics Home Reference (NIH)SRPX2
Genomic and cartography
GoldenPath hg38 (UCSC)SRPX2  -     chrX:100644166-100671299 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRPX2  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblSRPX2 - Xq22.1 [CytoView hg19]  SRPX2 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBISRPX2 [Mapview hg19]  SRPX2 [Mapview hg38]
OMIM300642   300643   
Gene and transcription
Genbank (Entrez)AF060567 AF393649 AK075462 AU104738 BC020733
RefSeq transcript (Entrez)NM_014467
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRPX2
Cluster EST : UnigeneHs.306339 [ NCBI ]
CGAP (NCI)Hs.306339
Alternative Splicing GalleryENSG00000102359
Gene ExpressionSRPX2 [ NCBI-GEO ]   SRPX2 [ EBI - ARRAY_EXPRESS ]   SRPX2 [ SEEK ]   SRPX2 [ MEM ]
Gene Expression Viewer (FireBrowse)SRPX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27286
GTEX Portal (Tissue expression)SRPX2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60687   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60687  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60687
Splice isoforms : SwissVarO60687
PhosPhoSitePlusO60687
Domaine pattern : Prosite (Expaxy)HYR (PS50825)    SUSHI (PS50923)   
Domains : Interpro (EBI)DUF4174    HYR_dom    SRPXSRPX2    Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)DUF4174 (PF13778)    HYR (PF02494)    Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam13778    pfam02494    pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)SRPX2
DMDM Disease mutations27286
Blocks (Seattle)SRPX2
SuperfamilyO60687
Human Protein AtlasENSG00000102359
Peptide AtlasO60687
HPRD06726
IPIIPI00004446   
Protein Interaction databases
DIP (DOE-UCLA)O60687
IntAct (EBI)O60687
FunCoupENSG00000102359
BioGRIDSRPX2
STRING (EMBL)SRPX2
ZODIACSRPX2
Ontologies - Pathways
QuickGOO60687
Ontology : AmiGOangiogenesis  receptor binding  protein binding  extracellular space  cytoplasm  cell surface  single organismal cell-cell adhesion  cell junction  hepatocyte growth factor binding  regulation of phosphorylation  identical protein binding  cell motility  positive regulation of synapse assembly  excitatory synapse  vocalization behavior  positive regulation of cell migration involved in sprouting angiogenesis  synaptic membrane  
Ontology : EGO-EBIangiogenesis  receptor binding  protein binding  extracellular space  cytoplasm  cell surface  single organismal cell-cell adhesion  cell junction  hepatocyte growth factor binding  regulation of phosphorylation  identical protein binding  cell motility  positive regulation of synapse assembly  excitatory synapse  vocalization behavior  positive regulation of cell migration involved in sprouting angiogenesis  synaptic membrane  
NDEx NetworkSRPX2
Atlas of Cancer Signalling NetworkSRPX2
Wikipedia pathwaysSRPX2
Orthology - Evolution
OrthoDB27286
GeneTree (enSembl)ENSG00000102359
Phylogenetic Trees/Animal Genes : TreeFamSRPX2
HOVERGENO60687
HOGENOMO60687
Homologs : HomoloGeneSRPX2
Homology/Alignments : Family Browser (UCSC)SRPX2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRPX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRPX2
dbVarSRPX2
ClinVarSRPX2
1000_GenomesSRPX2 
Exome Variant ServerSRPX2
ExAC (Exome Aggregation Consortium)SRPX2 (select the gene name)
Genetic variants : HAPMAP27286
Genomic Variants (DGV)SRPX2 [DGVbeta]
DECIPHERSRPX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRPX2 
Mutations
ICGC Data PortalSRPX2 
TCGA Data PortalSRPX2 
Broad Tumor PortalSRPX2
OASIS PortalSRPX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRPX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRPX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SRPX2
DgiDB (Drug Gene Interaction Database)SRPX2
DoCM (Curated mutations)SRPX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRPX2 (select a term)
intoGenSRPX2
Cancer3DSRPX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300642    300643   
Orphanet17532    3321    13906   
MedgenSRPX2
Genetic Testing Registry SRPX2
NextProtO60687 [Medical]
TSGene27286
GENETestsSRPX2
Target ValidationSRPX2
Huge Navigator SRPX2 [HugePedia]
snp3D : Map Gene to Disease27286
BioCentury BCIQSRPX2
ClinGenSRPX2 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27286
Chemical/Pharm GKB GenePA134983994
Clinical trialSRPX2
Miscellaneous
canSAR (ICR)SRPX2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRPX2
EVEXSRPX2
GoPubMedSRPX2
iHOPSRPX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:02 CEST 2017

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