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SRRD (SRR1 domain containing)

Identity

Alias_symbol (synonym)HC/HCC
SRR1L
Other alias
HGNC (Hugo) SRRD
LocusID (NCBI) 402055
Atlas_Id 74242
Location 22q12.1  [Link to chromosome band 22q12]
Location_base_pair Starts at 26879850 and ends at 26887904 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MST1 (3p21.31) / SRRD (22q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRRD   33910
Cards
Entrez_Gene (NCBI)SRRD  402055  SRR1 domain containing
AliasesHC/HCC; SRR1L
GeneCards (Weizmann)SRRD
Ensembl hg19 (Hinxton)ENSG00000100104 [Gene_View]  chr22:26879850-26887904 [Contig_View]  SRRD [Vega]
Ensembl hg38 (Hinxton)ENSG00000100104 [Gene_View]  chr22:26879850-26887904 [Contig_View]  SRRD [Vega]
ICGC DataPortalENSG00000100104
TCGA cBioPortalSRRD
AceView (NCBI)SRRD
Genatlas (Paris)SRRD
WikiGenes402055
SOURCE (Princeton)SRRD
Genetics Home Reference (NIH)SRRD
Genomic and cartography
GoldenPath hg19 (UCSC)SRRD  -     chr22:26879850-26887904 +  22q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SRRD  -     22q12.1   [Description]    (hg38-Dec_2013)
EnsemblSRRD - 22q12.1 [CytoView hg19]  SRRD - 22q12.1 [CytoView hg38]
Mapping of homologs : NCBISRRD [Mapview hg19]  SRRD [Mapview hg38]
OMIM602254   
Gene and transcription
Genbank (Entrez)AK293916 BC066962 BQ189353 DA325985 U63541
RefSeq transcript (Entrez)NM_001013694
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SRRD
Cluster EST : UnigeneHs.709914 [ NCBI ]
CGAP (NCI)Hs.709914
Alternative Splicing GalleryENSG00000100104
Gene ExpressionSRRD [ NCBI-GEO ]   SRRD [ EBI - ARRAY_EXPRESS ]   SRRD [ SEEK ]   SRRD [ MEM ]
Gene Expression Viewer (FireBrowse)SRRD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402055
GTEX Portal (Tissue expression)SRRD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UH36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UH36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UH36
Splice isoforms : SwissVarQ9UH36
PhosPhoSitePlusQ9UH36
Domains : Interpro (EBI)SRR1-like   
Domain families : Pfam (Sanger)SRR1 (PF07985)   
Domain families : Pfam (NCBI)pfam07985   
Conserved Domain (NCBI)SRRD
DMDM Disease mutations402055
Blocks (Seattle)SRRD
SuperfamilyQ9UH36
Human Protein AtlasENSG00000100104
Peptide AtlasQ9UH36
HPRD18437
IPIIPI00295865   IPI00013964   
Protein Interaction databases
DIP (DOE-UCLA)Q9UH36
IntAct (EBI)Q9UH36
FunCoupENSG00000100104
BioGRIDSRRD
STRING (EMBL)SRRD
ZODIACSRRD
Ontologies - Pathways
QuickGOQ9UH36
Ontology : AmiGOrhythmic process  
Ontology : EGO-EBIrhythmic process  
NDEx NetworkSRRD
Atlas of Cancer Signalling NetworkSRRD
Wikipedia pathwaysSRRD
Orthology - Evolution
OrthoDB402055
GeneTree (enSembl)ENSG00000100104
Phylogenetic Trees/Animal Genes : TreeFamSRRD
HOVERGENQ9UH36
HOGENOMQ9UH36
Homologs : HomoloGeneSRRD
Homology/Alignments : Family Browser (UCSC)SRRD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRRD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRRD
dbVarSRRD
ClinVarSRRD
1000_GenomesSRRD 
Exome Variant ServerSRRD
ExAC (Exome Aggregation Consortium)SRRD (select the gene name)
Genetic variants : HAPMAP402055
Genomic Variants (DGV)SRRD [DGVbeta]
DECIPHER (Syndromes)22:26879850-26887904  ENSG00000100104
CONAN: Copy Number AnalysisSRRD 
Mutations
ICGC Data PortalSRRD 
TCGA Data PortalSRRD 
Broad Tumor PortalSRRD
OASIS PortalSRRD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRRD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRRD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRRD
DgiDB (Drug Gene Interaction Database)SRRD
DoCM (Curated mutations)SRRD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRRD (select a term)
intoGenSRRD
Cancer3DSRRD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602254   
Orphanet
MedgenSRRD
Genetic Testing Registry SRRD
NextProtQ9UH36 [Medical]
TSGene402055
GENETestsSRRD
Huge Navigator SRRD [HugePedia]
snp3D : Map Gene to Disease402055
BioCentury BCIQSRRD
ClinGenSRRD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402055
Chemical/Pharm GKB GenePA162404806
Clinical trialSRRD
Miscellaneous
canSAR (ICR)SRRD (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRRD
EVEXSRRD
GoPubMedSRRD
iHOPSRRD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:42 CET 2017

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