Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SRRM1 (serine and arginine repetitive matrix 1)

Identity

Alias_namesserine/arginine repetitive matrix 1
Alias_symbol (synonym)SRM160
POP101
MGC39488
Other alias160-KD
HGNC (Hugo) SRRM1
LocusID (NCBI) 10250
Atlas_Id 74243
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 24643103 and ends at 24673281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLIC4 (1p36.11) / SRRM1 (1p36.11)NCL (2q37.1) / SRRM1 (1p36.11)OSBP (11q12.1) / SRRM1 (1p36.11)
SRRM1 (1p36.11) / AUNIP (1p36.11)SRRM1 (1p36.11) / CFDP1 (16q23.1)SRRM1 (1p36.11) / CNNM3 (2q11.2)
SRRM1 (1p36.11) / DDX17 (22q13.1)SRRM1 (1p36.11) / MED12L (3q25.1)SRRM1 (1p36.11) / NFYC (1p34.2)
SRRM1 (1p36.11) / SRRM1 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRRM1   16638
Cards
Entrez_Gene (NCBI)SRRM1  10250  serine and arginine repetitive matrix 1
Aliases160-KD; POP101; SRM160
GeneCards (Weizmann)SRRM1
Ensembl hg19 (Hinxton)ENSG00000133226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133226 [Gene_View]  chr1:24643103-24673281 [Contig_View]  SRRM1 [Vega]
ICGC DataPortalENSG00000133226
TCGA cBioPortalSRRM1
AceView (NCBI)SRRM1
Genatlas (Paris)SRRM1
WikiGenes10250
SOURCE (Princeton)SRRM1
Genetics Home Reference (NIH)SRRM1
Genomic and cartography
GoldenPath hg38 (UCSC)SRRM1  -     chr1:24643103-24673281 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRRM1  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblSRRM1 - 1p36.11 [CytoView hg19]  SRRM1 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBISRRM1 [Mapview hg19]  SRRM1 [Mapview hg38]
OMIM605975   
Gene and transcription
Genbank (Entrez)AA744578 AF048977 AF419855 AK293576 AK302498
RefSeq transcript (Entrez)NM_001303448 NM_001303449 NM_005839
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRRM1
Cluster EST : UnigeneHs.18192 [ NCBI ]
CGAP (NCI)Hs.18192
Alternative Splicing GalleryENSG00000133226
Gene ExpressionSRRM1 [ NCBI-GEO ]   SRRM1 [ EBI - ARRAY_EXPRESS ]   SRRM1 [ SEEK ]   SRRM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SRRM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10250
GTEX Portal (Tissue expression)SRRM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYB3
Splice isoforms : SwissVarQ8IYB3
PhosPhoSitePlusQ8IYB3
Domaine pattern : Prosite (Expaxy)PWI (PS51025)   
Domains : Interpro (EBI)PWI_dom   
Domain families : Pfam (Sanger)PWI (PF01480)   
Domain families : Pfam (NCBI)pfam01480   
Domain families : Smart (EMBL)PWI (SM00311)  
Conserved Domain (NCBI)SRRM1
DMDM Disease mutations10250
Blocks (Seattle)SRRM1
PDB (SRS)1MP1   
PDB (PDBSum)1MP1   
PDB (IMB)1MP1   
PDB (RSDB)1MP1   
Structural Biology KnowledgeBase1MP1   
SCOP (Structural Classification of Proteins)1MP1   
CATH (Classification of proteins structures)1MP1   
SuperfamilyQ8IYB3
Human Protein AtlasENSG00000133226
Peptide AtlasQ8IYB3
HPRD10441
IPIIPI00647720   IPI00908533   IPI00328293   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYB3
IntAct (EBI)Q8IYB3
FunCoupENSG00000133226
BioGRIDSRRM1
STRING (EMBL)SRRM1
ZODIACSRRM1
Ontologies - Pathways
QuickGOQ8IYB3
Ontology : AmiGORNA splicing, via transesterification reactions  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  RNA splicing  nuclear matrix  nuclear speck  mRNA 3'-end processing  catalytic step 2 spliceosome  
Ontology : EGO-EBIRNA splicing, via transesterification reactions  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  cytosol  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  RNA splicing  nuclear matrix  nuclear speck  mRNA 3'-end processing  catalytic step 2 spliceosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway   
NDEx NetworkSRRM1
Atlas of Cancer Signalling NetworkSRRM1
Wikipedia pathwaysSRRM1
Orthology - Evolution
OrthoDB10250
GeneTree (enSembl)ENSG00000133226
Phylogenetic Trees/Animal Genes : TreeFamSRRM1
HOVERGENQ8IYB3
HOGENOMQ8IYB3
Homologs : HomoloGeneSRRM1
Homology/Alignments : Family Browser (UCSC)SRRM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRRM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRRM1
dbVarSRRM1
ClinVarSRRM1
1000_GenomesSRRM1 
Exome Variant ServerSRRM1
ExAC (Exome Aggregation Consortium)SRRM1 (select the gene name)
Genetic variants : HAPMAP10250
Genomic Variants (DGV)SRRM1 [DGVbeta]
DECIPHERSRRM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRRM1 
Mutations
ICGC Data PortalSRRM1 
TCGA Data PortalSRRM1 
Broad Tumor PortalSRRM1
OASIS PortalSRRM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRRM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRRM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRRM1
DgiDB (Drug Gene Interaction Database)SRRM1
DoCM (Curated mutations)SRRM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRRM1 (select a term)
intoGenSRRM1
Cancer3DSRRM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605975   
Orphanet
MedgenSRRM1
Genetic Testing Registry SRRM1
NextProtQ8IYB3 [Medical]
TSGene10250
GENETestsSRRM1
Huge Navigator SRRM1 [HugePedia]
snp3D : Map Gene to Disease10250
BioCentury BCIQSRRM1
ClinGenSRRM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10250
Chemical/Pharm GKB GenePA38177
Clinical trialSRRM1
Miscellaneous
canSAR (ICR)SRRM1 (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRRM1
EVEXSRRM1
GoPubMedSRRM1
iHOPSRRM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:56:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.