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SRRM2 (serine/arginine repetitive matrix 2)

Identity

Alias_symbol (synonym)SRm300
SRL300
KIAA0324
Cwc21
Other alias300-KD
CWF21
HSPC075
HGNC (Hugo) SRRM2
LocusID (NCBI) 23524
Atlas_Id 55893
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2752329 and ends at 2771412 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHCY (20q11.22) / SRRM2 (16p13.3)ATG2A (11q13.1) / SRRM2 (16p13.3)IFT27 (22q12.3) / SRRM2 (16p13.3)
NDUFA13 (19p13.11) / SRRM2 (16p13.3)RAB5B (12q13.2) / SRRM2 (16p13.3)SRRM2 (16p13.3) / DPYD (1p21.3)
SRRM2 (16p13.3) / GPRC5A (12p13.1)SRRM2 (16p13.3) / JAG1 (20p12.2)SRRM2 (16p13.3) / KCTD5 (16p13.3)
SRRM2 (16p13.3) / LTF (3p21.31)SRRM2 (16p13.3) / MRPL15 (8q11.23)SRRM2 (16p13.3) / NUFIP2 (17q11.2)
SRRM2 (16p13.3) / P4HTM (3p21.31)SRRM2 (16p13.3) / PRPF8 (17p13.3)SRRM2 (16p13.3) / PRSS33 (16p13.3)
SRRM2 (16p13.3) / PTGDS (9q34.3)SRRM2 (16p13.3) / SRRM2 (16p13.3)ZNF26 (12q24.33) / SRRM2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRRM2   16639
Cards
Entrez_Gene (NCBI)SRRM2  23524  serine/arginine repetitive matrix 2
Aliases300-KD; CWF21; Cwc21; HSPC075; 
SRL300; SRm300
GeneCards (Weizmann)SRRM2
Ensembl hg19 (Hinxton)ENSG00000167978 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167978 [Gene_View]  chr16:2752329-2771412 [Contig_View]  SRRM2 [Vega]
ICGC DataPortalENSG00000167978
TCGA cBioPortalSRRM2
AceView (NCBI)SRRM2
Genatlas (Paris)SRRM2
WikiGenes23524
SOURCE (Princeton)SRRM2
Genetics Home Reference (NIH)SRRM2
Genomic and cartography
GoldenPath hg38 (UCSC)SRRM2  -     chr16:2752329-2771412 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRRM2  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSRRM2 - 16p13.3 [CytoView hg19]  SRRM2 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISRRM2 [Mapview hg19]  SRRM2 [Mapview hg38]
OMIM606032   
Gene and transcription
Genbank (Entrez)AB002322 AB015644 AB016087 AB016088 AB016089
RefSeq transcript (Entrez)NM_016333
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRRM2
Cluster EST : UnigeneHs.433343 [ NCBI ]
CGAP (NCI)Hs.433343
Alternative Splicing GalleryENSG00000167978
Gene ExpressionSRRM2 [ NCBI-GEO ]   SRRM2 [ EBI - ARRAY_EXPRESS ]   SRRM2 [ SEEK ]   SRRM2 [ MEM ]
Gene Expression Viewer (FireBrowse)SRRM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23524
GTEX Portal (Tissue expression)SRRM2
Human Protein AtlasENSG00000167978-SRRM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQ35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQ35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQ35
Splice isoforms : SwissVarQ9UQ35
PhosPhoSitePlusQ9UQ35
Domains : Interpro (EBI)mRNA_splic_Cwf21_dom    Spt5_C_dom   
Domain families : Pfam (Sanger)cwf21 (PF08312)   
Domain families : Pfam (NCBI)pfam08312   
Domain families : Smart (EMBL)CTD (SM01104)  
Conserved Domain (NCBI)SRRM2
DMDM Disease mutations23524
Blocks (Seattle)SRRM2
SuperfamilyQ9UQ35
Human Protein Atlas [tissue]ENSG00000167978-SRRM2 [tissue]
Peptide AtlasQ9UQ35
HPRD06913
IPIIPI00782992   IPI00785023   IPI00784560   IPI00552575   IPI01015893   IPI00943229   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQ35
IntAct (EBI)Q9UQ35
FunCoupENSG00000167978
BioGRIDSRRM2
STRING (EMBL)SRRM2
ZODIACSRRM2
Ontologies - Pathways
QuickGOQ9UQ35
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  nucleoplasm  Cajal body  nuclear speck  protein N-terminus binding  C2H2 zinc finger domain binding  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  nucleoplasm  Cajal body  nuclear speck  protein N-terminus binding  C2H2 zinc finger domain binding  catalytic step 2 spliceosome  
NDEx NetworkSRRM2
Atlas of Cancer Signalling NetworkSRRM2
Wikipedia pathwaysSRRM2
Orthology - Evolution
OrthoDB23524
GeneTree (enSembl)ENSG00000167978
Phylogenetic Trees/Animal Genes : TreeFamSRRM2
HOVERGENQ9UQ35
HOGENOMQ9UQ35
Homologs : HomoloGeneSRRM2
Homology/Alignments : Family Browser (UCSC)SRRM2
Gene fusions - Rearrangements
Tumor Fusion PortalSRRM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRRM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRRM2
dbVarSRRM2
ClinVarSRRM2
1000_GenomesSRRM2 
Exome Variant ServerSRRM2
ExAC (Exome Aggregation Consortium)ENSG00000167978
GNOMAD BrowserENSG00000167978
Genetic variants : HAPMAP23524
Genomic Variants (DGV)SRRM2 [DGVbeta]
DECIPHERSRRM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRRM2 
Mutations
ICGC Data PortalSRRM2 
TCGA Data PortalSRRM2 
Broad Tumor PortalSRRM2
OASIS PortalSRRM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRRM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRRM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRRM2
DgiDB (Drug Gene Interaction Database)SRRM2
DoCM (Curated mutations)SRRM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRRM2 (select a term)
intoGenSRRM2
Cancer3DSRRM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606032   
Orphanet
DisGeNETSRRM2
MedgenSRRM2
Genetic Testing Registry SRRM2
NextProtQ9UQ35 [Medical]
TSGene23524
GENETestsSRRM2
Target ValidationSRRM2
Huge Navigator SRRM2 [HugePedia]
snp3D : Map Gene to Disease23524
BioCentury BCIQSRRM2
ClinGenSRRM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23524
Chemical/Pharm GKB GenePA38178
Clinical trialSRRM2
Miscellaneous
canSAR (ICR)SRRM2 (select the gene name)
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRRM2
EVEXSRRM2
GoPubMedSRRM2
iHOPSRRM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:36:33 CET 2017

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