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SRRM3 (serine/arginine repetitive matrix 3)

Identity

Alias_symbol (synonym)FLJ37078
Other alias-
HGNC (Hugo) SRRM3
LocusID (NCBI) 222183
Atlas_Id 74247
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 76201893 and ends at 76287292 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRMT2A (22q11.21) / SRRM3 (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRRM3   26729
Cards
Entrez_Gene (NCBI)SRRM3  222183  serine/arginine repetitive matrix 3
Aliases
GeneCards (Weizmann)SRRM3
Ensembl hg19 (Hinxton)ENSG00000177679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177679 [Gene_View]  chr7:76201893-76287292 [Contig_View]  SRRM3 [Vega]
ICGC DataPortalENSG00000177679
TCGA cBioPortalSRRM3
AceView (NCBI)SRRM3
Genatlas (Paris)SRRM3
WikiGenes222183
SOURCE (Princeton)SRRM3
Genetics Home Reference (NIH)SRRM3
Genomic and cartography
GoldenPath hg38 (UCSC)SRRM3  -     chr7:76201893-76287292 +  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRRM3  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblSRRM3 - 7q11.23 [CytoView hg19]  SRRM3 - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISRRM3 [Mapview hg19]  SRRM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI815474 AK092590 AK094397 BC029292 BC045627
RefSeq transcript (Entrez)NM_001039212 NM_001110199 NM_001291831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRRM3
Cluster EST : UnigeneHs.511025 [ NCBI ]
CGAP (NCI)Hs.511025
Alternative Splicing GalleryENSG00000177679
Gene ExpressionSRRM3 [ NCBI-GEO ]   SRRM3 [ EBI - ARRAY_EXPRESS ]   SRRM3 [ SEEK ]   SRRM3 [ MEM ]
Gene Expression Viewer (FireBrowse)SRRM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222183
GTEX Portal (Tissue expression)SRRM3
Human Protein AtlasENSG00000177679-SRRM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNA2
Splice isoforms : SwissVarA6NNA2
PhosPhoSitePlusA6NNA2
Domains : Interpro (EBI)mRNA_splic_Cwf21_dom    SRRM_C   
Domain families : Pfam (Sanger)cwf21 (PF08312)    SRRM_C (PF15230)   
Domain families : Pfam (NCBI)pfam08312    pfam15230   
Domain families : Smart (EMBL)cwf21 (SM01115)  
Conserved Domain (NCBI)SRRM3
DMDM Disease mutations222183
Blocks (Seattle)SRRM3
SuperfamilyA6NNA2
Human Protein Atlas [tissue]ENSG00000177679-SRRM3 [tissue]
Peptide AtlasA6NNA2
HPRD08219
IPIIPI00936667   IPI00166114   IPI00784351   IPI00924799   
Protein Interaction databases
DIP (DOE-UCLA)A6NNA2
IntAct (EBI)A6NNA2
FunCoupENSG00000177679
BioGRIDSRRM3
STRING (EMBL)SRRM3
ZODIACSRRM3
Ontologies - Pathways
QuickGOA6NNA2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSRRM3
Atlas of Cancer Signalling NetworkSRRM3
Wikipedia pathwaysSRRM3
Orthology - Evolution
OrthoDB222183
GeneTree (enSembl)ENSG00000177679
Phylogenetic Trees/Animal Genes : TreeFamSRRM3
HOVERGENA6NNA2
HOGENOMA6NNA2
Homologs : HomoloGeneSRRM3
Homology/Alignments : Family Browser (UCSC)SRRM3
Gene fusions - Rearrangements
Tumor Fusion PortalSRRM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRRM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRRM3
dbVarSRRM3
ClinVarSRRM3
1000_GenomesSRRM3 
Exome Variant ServerSRRM3
ExAC (Exome Aggregation Consortium)ENSG00000177679
GNOMAD BrowserENSG00000177679
Genetic variants : HAPMAP222183
Genomic Variants (DGV)SRRM3 [DGVbeta]
DECIPHERSRRM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRRM3 
Mutations
ICGC Data PortalSRRM3 
TCGA Data PortalSRRM3 
Broad Tumor PortalSRRM3
OASIS PortalSRRM3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSRRM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRRM3
DgiDB (Drug Gene Interaction Database)SRRM3
DoCM (Curated mutations)SRRM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRRM3 (select a term)
intoGenSRRM3
Cancer3DSRRM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSRRM3
MedgenSRRM3
Genetic Testing Registry SRRM3
NextProtA6NNA2 [Medical]
TSGene222183
GENETestsSRRM3
Target ValidationSRRM3
Huge Navigator SRRM3 [HugePedia]
snp3D : Map Gene to Disease222183
BioCentury BCIQSRRM3
ClinGenSRRM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222183
Chemical/Pharm GKB GenePA165618294
Clinical trialSRRM3
Miscellaneous
canSAR (ICR)SRRM3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRRM3
EVEXSRRM3
GoPubMedSRRM3
iHOPSRRM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:19 CET 2017

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