Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SRRM5 (serine/arginine repetitive matrix 5)

Identity

Other aliasZNF576
HGNC (Hugo) SRRM5
LocusID (NCBI) 100170229
Atlas_Id 74248
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43612101 and ends at 43614498 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRRM5   37248
Cards
Entrez_Gene (NCBI)SRRM5  100170229  serine/arginine repetitive matrix 5
AliasesZNF576
GeneCards (Weizmann)SRRM5
Ensembl hg19 (Hinxton)ENSG00000226763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226763 [Gene_View]  chr19:43612101-43614498 [Contig_View]  SRRM5 [Vega]
ICGC DataPortalENSG00000226763
TCGA cBioPortalSRRM5
AceView (NCBI)SRRM5
Genatlas (Paris)SRRM5
WikiGenes100170229
SOURCE (Princeton)SRRM5
Genetics Home Reference (NIH)SRRM5
Genomic and cartography
GoldenPath hg38 (UCSC)SRRM5  -     chr19:43612101-43614498 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRRM5  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblSRRM5 - 19q13.31 [CytoView hg19]  SRRM5 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBISRRM5 [Mapview hg19]  SRRM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093056 BC034980 BM679887
RefSeq transcript (Entrez)NM_001145641
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRRM5
Cluster EST : UnigeneHs.722032 [ NCBI ]
CGAP (NCI)Hs.722032
Alternative Splicing GalleryENSG00000226763
Gene ExpressionSRRM5 [ NCBI-GEO ]   SRRM5 [ EBI - ARRAY_EXPRESS ]   SRRM5 [ SEEK ]   SRRM5 [ MEM ]
Gene Expression Viewer (FireBrowse)SRRM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100170229
GTEX Portal (Tissue expression)SRRM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3KS81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3KS81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3KS81
Splice isoforms : SwissVarB3KS81
PhosPhoSitePlusB3KS81
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SRRM5
DMDM Disease mutations100170229
Blocks (Seattle)SRRM5
SuperfamilyB3KS81
Human Protein AtlasENSG00000226763
Peptide AtlasB3KS81
IPIIPI00969099   IPI00976886   IPI00983876   
Protein Interaction databases
DIP (DOE-UCLA)B3KS81
IntAct (EBI)B3KS81
FunCoupENSG00000226763
BioGRIDSRRM5
STRING (EMBL)SRRM5
ZODIACSRRM5
Ontologies - Pathways
QuickGOB3KS81
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSRRM5
Atlas of Cancer Signalling NetworkSRRM5
Wikipedia pathwaysSRRM5
Orthology - Evolution
OrthoDB100170229
GeneTree (enSembl)ENSG00000226763
Phylogenetic Trees/Animal Genes : TreeFamSRRM5
HOVERGENB3KS81
HOGENOMB3KS81
Homologs : HomoloGeneSRRM5
Homology/Alignments : Family Browser (UCSC)SRRM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRRM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRRM5
dbVarSRRM5
ClinVarSRRM5
1000_GenomesSRRM5 
Exome Variant ServerSRRM5
ExAC (Exome Aggregation Consortium)SRRM5 (select the gene name)
Genetic variants : HAPMAP100170229
Genomic Variants (DGV)SRRM5 [DGVbeta]
DECIPHERSRRM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRRM5 
Mutations
ICGC Data PortalSRRM5 
TCGA Data PortalSRRM5 
Broad Tumor PortalSRRM5
OASIS PortalSRRM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRRM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRRM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRRM5
DgiDB (Drug Gene Interaction Database)SRRM5
DoCM (Curated mutations)SRRM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRRM5 (select a term)
intoGenSRRM5
Cancer3DSRRM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSRRM5
Genetic Testing Registry SRRM5
NextProtB3KS81 [Medical]
TSGene100170229
GENETestsSRRM5
Target ValidationSRRM5
Huge Navigator SRRM5 [HugePedia]
snp3D : Map Gene to Disease100170229
BioCentury BCIQSRRM5
ClinGenSRRM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100170229
Chemical/Pharm GKB GenePA165394321
Clinical trialSRRM5
Miscellaneous
canSAR (ICR)SRRM5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRRM5
EVEXSRRM5
GoPubMedSRRM5
iHOPSRRM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:30 CEST 2017

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