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SRSF12 (serine and arginine rich splicing factor 12)

Identity

Alias_namesSFRS13B
splicing factor, arginine/serine-rich 13B
serine/arginine-rich splicing factor 12
Alias_symbol (synonym)SRrp35
SFRS19
Other alias
HGNC (Hugo) SRSF12
LocusID (NCBI) 135295
Atlas_Id 74250
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 89095959 and ends at 89118081 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRSF12   21220
Cards
Entrez_Gene (NCBI)SRSF12  135295  serine and arginine rich splicing factor 12
AliasesSFRS13B; SFRS19; SRrp35
GeneCards (Weizmann)SRSF12
Ensembl hg19 (Hinxton)ENSG00000154548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154548 [Gene_View]  ENSG00000154548 [Sequence]  chr6:89095959-89118081 [Contig_View]  SRSF12 [Vega]
ICGC DataPortalENSG00000154548
TCGA cBioPortalSRSF12
AceView (NCBI)SRSF12
Genatlas (Paris)SRSF12
WikiGenes135295
SOURCE (Princeton)SRSF12
Genetics Home Reference (NIH)SRSF12
Genomic and cartography
GoldenPath hg38 (UCSC)SRSF12  -     chr6:89095959-89118081 -  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRSF12  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblSRSF12 - 6q15 [CytoView hg19]  SRSF12 - 6q15 [CytoView hg38]
Mapping of homologs : NCBISRSF12 [Mapview hg19]  SRSF12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA889416 AF449428 AK090803 AK123215 AK314008
RefSeq transcript (Entrez)NM_080743
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRSF12
Cluster EST : UnigeneHs.254414 [ NCBI ]
CGAP (NCI)Hs.254414
Alternative Splicing GalleryENSG00000154548
Gene ExpressionSRSF12 [ NCBI-GEO ]   SRSF12 [ EBI - ARRAY_EXPRESS ]   SRSF12 [ SEEK ]   SRSF12 [ MEM ]
Gene Expression Viewer (FireBrowse)SRSF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)135295
GTEX Portal (Tissue expression)SRSF12
Human Protein AtlasENSG00000154548-SRSF12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXF0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXF0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXF0
Splice isoforms : SwissVarQ8WXF0
PhosPhoSitePlusQ8WXF0
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SRSF12
DMDM Disease mutations135295
Blocks (Seattle)SRSF12
SuperfamilyQ8WXF0
Human Protein Atlas [tissue]ENSG00000154548-SRSF12 [tissue]
Peptide AtlasQ8WXF0
HPRD11605
IPIIPI00942141   IPI00984016   IPI00974442   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXF0
IntAct (EBI)Q8WXF0
FunCoupENSG00000154548
BioGRIDSRSF12
STRING (EMBL)SRSF12
ZODIACSRSF12
Ontologies - Pathways
QuickGOQ8WXF0
Ontology : AmiGO###############################################################################################################################################################################################################################################################                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                  
NDEx NetworkSRSF12
Atlas of Cancer Signalling NetworkSRSF12
Wikipedia pathwaysSRSF12
Orthology - Evolution
OrthoDB135295
GeneTree (enSembl)ENSG00000154548
Phylogenetic Trees/Animal Genes : TreeFamSRSF12
HOVERGENQ8WXF0
HOGENOMQ8WXF0
Homologs : HomoloGeneSRSF12
Homology/Alignments : Family Browser (UCSC)SRSF12
Gene fusions - Rearrangements
Fusion : QuiverSRSF12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRSF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRSF12
dbVarSRSF12
ClinVarSRSF12
1000_GenomesSRSF12 
Exome Variant ServerSRSF12
ExAC (Exome Aggregation Consortium)ENSG00000154548
GNOMAD BrowserENSG00000154548
Varsome BrowserSRSF12
Genetic variants : HAPMAP135295
Genomic Variants (DGV)SRSF12 [DGVbeta]
DECIPHERSRSF12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRSF12 
Mutations
ICGC Data PortalSRSF12 
TCGA Data PortalSRSF12 
Broad Tumor PortalSRSF12
OASIS PortalSRSF12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRSF12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRSF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRSF12
DgiDB (Drug Gene Interaction Database)SRSF12
DoCM (Curated mutations)SRSF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRSF12 (select a term)
intoGenSRSF12
Cancer3DSRSF12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSRSF12
MedgenSRSF12
Genetic Testing Registry SRSF12
NextProtQ8WXF0 [Medical]
TSGene135295
GENETestsSRSF12
Target ValidationSRSF12
Huge Navigator SRSF12 [HugePedia]
snp3D : Map Gene to Disease135295
BioCentury BCIQSRSF12
ClinGenSRSF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD135295
Chemical/Pharm GKB GenePA165618223
Clinical trialSRSF12
Miscellaneous
canSAR (ICR)SRSF12 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRSF12
EVEXSRSF12
GoPubMedSRSF12
iHOPSRSF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:33:18 CEST 2018

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