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SRSF9 (serine and arginine rich splicing factor 9)

Identity

Alias_namesSFRS9
splicing factor, arginine/serine-rich 9
serine/arginine-rich splicing factor 9
Alias_symbol (synonym)SRp30c
Other alias
HGNC (Hugo) SRSF9
LocusID (NCBI) 8683
Atlas_Id 52656
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 120461668 and ends at 120469755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRSF9 (12q24.31) / GATC (12q24.31)SRSF9 (12q24.31) / KDM4C (9p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SRSF9   10791
Cards
Entrez_Gene (NCBI)SRSF9  8683  serine and arginine rich splicing factor 9
AliasesSFRS9; SRp30c
GeneCards (Weizmann)SRSF9
Ensembl hg19 (Hinxton)ENSG00000111786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111786 [Gene_View]  chr12:120461668-120469755 [Contig_View]  SRSF9 [Vega]
ICGC DataPortalENSG00000111786
TCGA cBioPortalSRSF9
AceView (NCBI)SRSF9
Genatlas (Paris)SRSF9
WikiGenes8683
SOURCE (Princeton)SRSF9
Genetics Home Reference (NIH)SRSF9
Genomic and cartography
GoldenPath hg38 (UCSC)SRSF9  -     chr12:120461668-120469755 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SRSF9  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblSRSF9 - 12q24.31 [CytoView hg19]  SRSF9 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBISRSF9 [Mapview hg19]  SRSF9 [Mapview hg38]
OMIM601943   
Gene and transcription
Genbank (Entrez)AA845918 AI005398 AK290644 AK294254 AK309778
RefSeq transcript (Entrez)NM_003769
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SRSF9
Cluster EST : UnigeneHs.744094 [ NCBI ]
CGAP (NCI)Hs.744094
Alternative Splicing GalleryENSG00000111786
Gene ExpressionSRSF9 [ NCBI-GEO ]   SRSF9 [ EBI - ARRAY_EXPRESS ]   SRSF9 [ SEEK ]   SRSF9 [ MEM ]
Gene Expression Viewer (FireBrowse)SRSF9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8683
GTEX Portal (Tissue expression)SRSF9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13242   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13242  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13242
Splice isoforms : SwissVarQ13242
PhosPhoSitePlusQ13242
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)SRSF9
DMDM Disease mutations8683
Blocks (Seattle)SRSF9
SuperfamilyQ13242
Human Protein AtlasENSG00000111786
Peptide AtlasQ13242
HPRD09053
IPIIPI00012340   IPI00793205   IPI01022396   
Protein Interaction databases
DIP (DOE-UCLA)Q13242
IntAct (EBI)Q13242
FunCoupENSG00000111786
BioGRIDSRSF9
STRING (EMBL)SRSF9
ZODIACSRSF9
Ontologies - Pathways
QuickGOQ13242
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  nucleolus  termination of RNA polymerase II transcription  mRNA splice site selection  mRNA processing  RNA export from nucleus  mRNA export from nucleus  response to toxic substance  mRNA 3'-end processing  response to alkaloid  negative regulation of mRNA splicing, via spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleoplasm  nucleoplasm  nucleolus  termination of RNA polymerase II transcription  mRNA splice site selection  mRNA processing  RNA export from nucleus  mRNA export from nucleus  response to toxic substance  mRNA 3'-end processing  response to alkaloid  negative regulation of mRNA splicing, via spliceosome  
Pathways : KEGGSpliceosome    Herpes simplex infection   
NDEx NetworkSRSF9
Atlas of Cancer Signalling NetworkSRSF9
Wikipedia pathwaysSRSF9
Orthology - Evolution
OrthoDB8683
GeneTree (enSembl)ENSG00000111786
Phylogenetic Trees/Animal Genes : TreeFamSRSF9
HOVERGENQ13242
HOGENOMQ13242
Homologs : HomoloGeneSRSF9
Homology/Alignments : Family Browser (UCSC)SRSF9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSRSF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SRSF9
dbVarSRSF9
ClinVarSRSF9
1000_GenomesSRSF9 
Exome Variant ServerSRSF9
ExAC (Exome Aggregation Consortium)SRSF9 (select the gene name)
Genetic variants : HAPMAP8683
Genomic Variants (DGV)SRSF9 [DGVbeta]
DECIPHERSRSF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSRSF9 
Mutations
ICGC Data PortalSRSF9 
TCGA Data PortalSRSF9 
Broad Tumor PortalSRSF9
OASIS PortalSRSF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSRSF9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSRSF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SRSF9
DgiDB (Drug Gene Interaction Database)SRSF9
DoCM (Curated mutations)SRSF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SRSF9 (select a term)
intoGenSRSF9
Cancer3DSRSF9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601943   
Orphanet
MedgenSRSF9
Genetic Testing Registry SRSF9
NextProtQ13242 [Medical]
TSGene8683
GENETestsSRSF9
Huge Navigator SRSF9 [HugePedia]
snp3D : Map Gene to Disease8683
BioCentury BCIQSRSF9
ClinGenSRSF9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8683
Chemical/Pharm GKB GenePA35707
Clinical trialSRSF9
Miscellaneous
canSAR (ICR)SRSF9 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSRSF9
EVEXSRSF9
GoPubMedSRSF9
iHOPSRSF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:08 CEST 2017

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