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SS18L2 (synovial sarcoma translocation gene on chromosome 18-like 2)

Identity

Alias_namessynovial sarcoma translocation gene on chromosome 18-like 2
Alias_symbol (synonym)KIAA-iso
Other alias
HGNC (Hugo) SS18L2
LocusID (NCBI) 51188
Atlas_Id 42393
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42623332 and ends at 42636490 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SS18L2   15593
Cards
Entrez_Gene (NCBI)SS18L2  51188  synovial sarcoma translocation gene on chromosome 18-like 2
AliasesKIAA-iso
GeneCards (Weizmann)SS18L2
Ensembl hg19 (Hinxton)ENSG00000008324 [Gene_View]  chr3:42623332-42636490 [Contig_View]  SS18L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000008324 [Gene_View]  chr3:42623332-42636490 [Contig_View]  SS18L2 [Vega]
ICGC DataPortalENSG00000008324
TCGA cBioPortalSS18L2
AceView (NCBI)SS18L2
Genatlas (Paris)SS18L2
WikiGenes51188
SOURCE (Princeton)SS18L2
Genetics Home Reference (NIH)SS18L2
Genomic and cartography
GoldenPath hg19 (UCSC)SS18L2  -     chr3:42623332-42636490 +  3p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SS18L2  -     3p22.1   [Description]    (hg38-Dec_2013)
EnsemblSS18L2 - 3p22.1 [CytoView hg19]  SS18L2 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBISS18L2 [Mapview hg19]  SS18L2 [Mapview hg38]
OMIM606473   
Gene and transcription
Genbank (Entrez)AF201950 AI027415 AK312225 BC017804 BC020444
RefSeq transcript (Entrez)NM_016305
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)SS18L2
Cluster EST : UnigeneHs.534454 [ NCBI ]
CGAP (NCI)Hs.534454
Alternative Splicing GalleryENSG00000008324
Gene ExpressionSS18L2 [ NCBI-GEO ]   SS18L2 [ EBI - ARRAY_EXPRESS ]   SS18L2 [ SEEK ]   SS18L2 [ MEM ]
Gene Expression Viewer (FireBrowse)SS18L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51188
GTEX Portal (Tissue expression)SS18L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHA2
Splice isoforms : SwissVarQ9UHA2
PhosPhoSitePlusQ9UHA2
Domains : Interpro (EBI)SS18_fam   
Domain families : Pfam (Sanger)SSXT (PF05030)   
Domain families : Pfam (NCBI)pfam05030   
Conserved Domain (NCBI)SS18L2
DMDM Disease mutations51188
Blocks (Seattle)SS18L2
SuperfamilyQ9UHA2
Human Protein AtlasENSG00000008324
Peptide AtlasQ9UHA2
HPRD09399
IPIIPI00008439   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHA2
IntAct (EBI)Q9UHA2
FunCoupENSG00000008324
BioGRIDSS18L2
STRING (EMBL)SS18L2
ZODIACSS18L2
Ontologies - Pathways
QuickGOQ9UHA2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSS18L2
Atlas of Cancer Signalling NetworkSS18L2
Wikipedia pathwaysSS18L2
Orthology - Evolution
OrthoDB51188
GeneTree (enSembl)ENSG00000008324
Phylogenetic Trees/Animal Genes : TreeFamSS18L2
HOVERGENQ9UHA2
HOGENOMQ9UHA2
Homologs : HomoloGeneSS18L2
Homology/Alignments : Family Browser (UCSC)SS18L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSS18L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SS18L2
dbVarSS18L2
ClinVarSS18L2
1000_GenomesSS18L2 
Exome Variant ServerSS18L2
ExAC (Exome Aggregation Consortium)SS18L2 (select the gene name)
Genetic variants : HAPMAP51188
Genomic Variants (DGV)SS18L2 [DGVbeta]
DECIPHER (Syndromes)3:42623332-42636490  ENSG00000008324
CONAN: Copy Number AnalysisSS18L2 
Mutations
ICGC Data PortalSS18L2 
TCGA Data PortalSS18L2 
Broad Tumor PortalSS18L2
OASIS PortalSS18L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSS18L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSS18L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SS18L2
DgiDB (Drug Gene Interaction Database)SS18L2
DoCM (Curated mutations)SS18L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SS18L2 (select a term)
intoGenSS18L2
Cancer3DSS18L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606473   
Orphanet
MedgenSS18L2
Genetic Testing Registry SS18L2
NextProtQ9UHA2 [Medical]
TSGene51188
GENETestsSS18L2
Huge Navigator SS18L2 [HugePedia]
snp3D : Map Gene to Disease51188
BioCentury BCIQSS18L2
ClinGenSS18L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51188
Chemical/Pharm GKB GenePA37990
Clinical trialSS18L2
Miscellaneous
canSAR (ICR)SS18L2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSS18L2
EVEXSS18L2
GoPubMedSS18L2
iHOPSS18L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:13 CET 2017

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