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SSBP1 (single stranded DNA binding protein 1)

Identity

Alias_namessingle-stranded DNA-binding protein
single-stranded DNA binding protein 1
single-stranded DNA binding protein 1, mitochondrial
Alias_symbol (synonym)SSBP
mtSSB
Other aliasMt-SSB
SOSS-B1
HGNC (Hugo) SSBP1
LocusID (NCBI) 6742
Atlas_Id 50698
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 141738607 and ends at 141750488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CMIP (16q23.2) / SSBP1 (7q34)MTIF3 (13q12.2) / SSBP1 (7q34)PERP (6q23.3) / SSBP1 (7q34)
SSBP1 (7q34) / DLG5 (10q22.3)SSBP1 (7q34) / SKIL (3q26.2)TM7SF3 (12p11.23) / SSBP1 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSBP1   11317
Cards
Entrez_Gene (NCBI)SSBP1  6742  single stranded DNA binding protein 1
AliasesMt-SSB; SOSS-B1; SSBP; mtSSB
GeneCards (Weizmann)SSBP1
Ensembl hg19 (Hinxton)ENSG00000106028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106028 [Gene_View]  chr7:141738607-141750488 [Contig_View]  SSBP1 [Vega]
ICGC DataPortalENSG00000106028
TCGA cBioPortalSSBP1
AceView (NCBI)SSBP1
Genatlas (Paris)SSBP1
WikiGenes6742
SOURCE (Princeton)SSBP1
Genetics Home Reference (NIH)SSBP1
Genomic and cartography
GoldenPath hg38 (UCSC)SSBP1  -     chr7:141738607-141750488 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSBP1  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblSSBP1 - 7q34 [CytoView hg19]  SSBP1 - 7q34 [CytoView hg38]
Mapping of homologs : NCBISSBP1 [Mapview hg19]  SSBP1 [Mapview hg38]
OMIM600439   
Gene and transcription
Genbank (Entrez)AF277319 AK294393 AK311200 AK313033 BC000895
RefSeq transcript (Entrez)NM_001256510 NM_001256511 NM_001256512 NM_001256513 NM_003143
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSBP1
Cluster EST : UnigeneHs.740496 [ NCBI ]
CGAP (NCI)Hs.740496
Alternative Splicing GalleryENSG00000106028
Gene ExpressionSSBP1 [ NCBI-GEO ]   SSBP1 [ EBI - ARRAY_EXPRESS ]   SSBP1 [ SEEK ]   SSBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6742
GTEX Portal (Tissue expression)SSBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ04837   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ04837  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ04837
Splice isoforms : SwissVarQ04837
PhosPhoSitePlusQ04837
Domaine pattern : Prosite (Expaxy)SSB (PS50935)   
Domains : Interpro (EBI)NA-bd_OB-fold    Primosome_PriB/ssb    ssDNA-bd   
Domain families : Pfam (Sanger)SSB (PF00436)   
Domain families : Pfam (NCBI)pfam00436   
Conserved Domain (NCBI)SSBP1
DMDM Disease mutations6742
Blocks (Seattle)SSBP1
PDB (SRS)1S3O    2DUD    3ULL   
PDB (PDBSum)1S3O    2DUD    3ULL   
PDB (IMB)1S3O    2DUD    3ULL   
PDB (RSDB)1S3O    2DUD    3ULL   
Structural Biology KnowledgeBase1S3O    2DUD    3ULL   
SCOP (Structural Classification of Proteins)1S3O    2DUD    3ULL   
CATH (Classification of proteins structures)1S3O    2DUD    3ULL   
SuperfamilyQ04837
Human Protein AtlasENSG00000106028
Peptide AtlasQ04837
HPRD02703
IPIIPI00029744   IPI00922415   IPI00816584   IPI01014556   IPI00947310   IPI00946431   
Protein Interaction databases
DIP (DOE-UCLA)Q04837
IntAct (EBI)Q04837
FunCoupENSG00000106028
BioGRIDSSBP1
STRING (EMBL)SSBP1
ZODIACSSBP1
Ontologies - Pathways
QuickGOQ04837
Ontology : AmiGOchromatin binding  single-stranded DNA binding  RNA binding  protein binding  nucleus  mitochondrion  mitochondrial matrix  DNA replication  mitochondrion organization  mitochondrial nucleoid  positive regulation of helicase activity  extracellular exosome  mitochondrion morphogenesis  
Ontology : EGO-EBIchromatin binding  single-stranded DNA binding  RNA binding  protein binding  nucleus  mitochondrion  mitochondrial matrix  DNA replication  mitochondrion organization  mitochondrial nucleoid  positive regulation of helicase activity  extracellular exosome  mitochondrion morphogenesis  
Pathways : KEGGDNA replication    Mismatch repair    Homologous recombination   
NDEx NetworkSSBP1
Atlas of Cancer Signalling NetworkSSBP1
Wikipedia pathwaysSSBP1
Orthology - Evolution
OrthoDB6742
GeneTree (enSembl)ENSG00000106028
Phylogenetic Trees/Animal Genes : TreeFamSSBP1
HOVERGENQ04837
HOGENOMQ04837
Homologs : HomoloGeneSSBP1
Homology/Alignments : Family Browser (UCSC)SSBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSBP1
dbVarSSBP1
ClinVarSSBP1
1000_GenomesSSBP1 
Exome Variant ServerSSBP1
ExAC (Exome Aggregation Consortium)SSBP1 (select the gene name)
Genetic variants : HAPMAP6742
Genomic Variants (DGV)SSBP1 [DGVbeta]
DECIPHERSSBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSBP1 
Mutations
ICGC Data PortalSSBP1 
TCGA Data PortalSSBP1 
Broad Tumor PortalSSBP1
OASIS PortalSSBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SSBP1
DgiDB (Drug Gene Interaction Database)SSBP1
DoCM (Curated mutations)SSBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSBP1 (select a term)
intoGenSSBP1
Cancer3DSSBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600439   
Orphanet
MedgenSSBP1
Genetic Testing Registry SSBP1
NextProtQ04837 [Medical]
TSGene6742
GENETestsSSBP1
Huge Navigator SSBP1 [HugePedia]
snp3D : Map Gene to Disease6742
BioCentury BCIQSSBP1
ClinGenSSBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6742
Chemical/Pharm GKB GenePA36141
Clinical trialSSBP1
Miscellaneous
canSAR (ICR)SSBP1 (select the gene name)
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSBP1
EVEXSSBP1
GoPubMedSSBP1
iHOPSSBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:10 CEST 2017

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