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SSBP2 (single stranded DNA binding protein 2)

Identity

Alias_namessingle-stranded DNA-binding protein 2
single-stranded DNA binding protein 2
Alias_symbol (synonym)HSPC116
Other aliasSOSS-B2
HGNC (Hugo) SSBP2
LocusID (NCBI) 23635
Atlas_Id 46000
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 80713179 and ends at 81047072 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SSBP2 (5q14.1) / FER (5q21.3)SSBP2 (5q14.1) / JAK2 (9p24.1)SSBP2 (5q14.1) / LGALS2 (22q13.1)
SSBP2 (5q14.1) / NTRK1 (1q23.1)SSBP2 (5q14.1) / SERINC5 (5q14.1)SSBP2 (5q14.1) / SSBP2 (5q14.1)
SSBP2 (5q14.1) / WIPF3 (7p14.3)SSBP2 5q14.1 / JAK2 9p24.1SSBP2 5q14.1 / LGALS2 22q13.1
SSBP2 5q14.1 / NTRK1 1q23.1SSBP2 5q14.1 / SERINC5 5q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;9)(q14.1;p24) SSBP2/JAK2


External links

Nomenclature
HGNC (Hugo)SSBP2   15831
Cards
Entrez_Gene (NCBI)SSBP2  23635  single stranded DNA binding protein 2
AliasesHSPC116; SOSS-B2
GeneCards (Weizmann)SSBP2
Ensembl hg19 (Hinxton)ENSG00000145687 [Gene_View]  chr5:80713179-81047072 [Contig_View]  SSBP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145687 [Gene_View]  chr5:80713179-81047072 [Contig_View]  SSBP2 [Vega]
ICGC DataPortalENSG00000145687
TCGA cBioPortalSSBP2
AceView (NCBI)SSBP2
Genatlas (Paris)SSBP2
WikiGenes23635
SOURCE (Princeton)SSBP2
Genetics Home Reference (NIH)SSBP2
Genomic and cartography
GoldenPath hg19 (UCSC)SSBP2  -     chr5:80713179-81047072 -  5q14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSBP2  -     5q14.1   [Description]    (hg38-Dec_2013)
EnsemblSSBP2 - 5q14.1 [CytoView hg19]  SSBP2 - 5q14.1 [CytoView hg38]
Mapping of homologs : NCBISSBP2 [Mapview hg19]  SSBP2 [Mapview hg38]
OMIM607389   
Gene and transcription
Genbank (Entrez)AA013030 AF077048 AF161465 AK074537 AK293544
RefSeq transcript (Entrez)NM_001256732 NM_001256733 NM_001256734 NM_001256735 NM_001256736 NM_012446
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)SSBP2
Cluster EST : UnigeneHs.102735 [ NCBI ]
CGAP (NCI)Hs.102735
Alternative Splicing GalleryENSG00000145687
Gene ExpressionSSBP2 [ NCBI-GEO ]   SSBP2 [ EBI - ARRAY_EXPRESS ]   SSBP2 [ SEEK ]   SSBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23635
GTEX Portal (Tissue expression)SSBP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP81877   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP81877  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP81877
Splice isoforms : SwissVarP81877
PhosPhoSitePlusP81877
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)LisH    SSDP_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)SSBP2
DMDM Disease mutations23635
Blocks (Seattle)SSBP2
SuperfamilyP81877
Human Protein AtlasENSG00000145687
Peptide AtlasP81877
HPRD09577
IPIIPI00294052   IPI00657782   IPI00966514   IPI00922103   IPI00963832   IPI00922550   IPI01018620   IPI00968048   
Protein Interaction databases
DIP (DOE-UCLA)P81877
IntAct (EBI)P81877
FunCoupENSG00000145687
BioGRIDSSBP2
STRING (EMBL)SSBP2
ZODIACSSBP2
Ontologies - Pathways
QuickGOP81877
Ontology : AmiGOsingle-stranded DNA binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  
Ontology : EGO-EBIsingle-stranded DNA binding  nucleus  cytoplasm  regulation of transcription, DNA-templated  
NDEx NetworkSSBP2
Atlas of Cancer Signalling NetworkSSBP2
Wikipedia pathwaysSSBP2
Orthology - Evolution
OrthoDB23635
GeneTree (enSembl)ENSG00000145687
Phylogenetic Trees/Animal Genes : TreeFamSSBP2
HOVERGENP81877
HOGENOMP81877
Homologs : HomoloGeneSSBP2
Homology/Alignments : Family Browser (UCSC)SSBP2
Gene fusions - Rearrangements
Fusion : MitelmanSSBP2/FER [5q14.1/5q21.3]  
Fusion : MitelmanSSBP2/JAK2 [5q14.1/9p24.1]  [t(5;9)(q14;p24)]  
Fusion : MitelmanSSBP2/LGALS2 [5q14.1/22q13.1]  [t(5;22)(q14;q13)]  
Fusion : MitelmanSSBP2/NTRK1 [5q14.1/1q23.1]  [t(1;5)(q23;q14)]  
Fusion : MitelmanSSBP2/SERINC5 [5q14.1/5q14.1]  [t(5;5)(q14;q14)]  
Fusion: TCGASSBP2 5q14.1 LGALS2 22q13.1 SKCM
Fusion: TCGASSBP2 5q14.1 NTRK1 1q23.1 THCA
Fusion: TCGASSBP2 5q14.1 SERINC5 5q14.1 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSBP2
dbVarSSBP2
ClinVarSSBP2
1000_GenomesSSBP2 
Exome Variant ServerSSBP2
ExAC (Exome Aggregation Consortium)SSBP2 (select the gene name)
Genetic variants : HAPMAP23635
Genomic Variants (DGV)SSBP2 [DGVbeta]
DECIPHER (Syndromes)5:80713179-81047072  ENSG00000145687
CONAN: Copy Number AnalysisSSBP2 
Mutations
ICGC Data PortalSSBP2 
TCGA Data PortalSSBP2 
Broad Tumor PortalSSBP2
OASIS PortalSSBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSBP2
DgiDB (Drug Gene Interaction Database)SSBP2
DoCM (Curated mutations)SSBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSBP2 (select a term)
intoGenSSBP2
Cancer3DSSBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607389   
Orphanet
MedgenSSBP2
Genetic Testing Registry SSBP2
NextProtP81877 [Medical]
TSGene23635
GENETestsSSBP2
Huge Navigator SSBP2 [HugePedia]
snp3D : Map Gene to Disease23635
BioCentury BCIQSSBP2
ClinGenSSBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23635
Chemical/Pharm GKB GenePA38046
Clinical trialSSBP2
Miscellaneous
canSAR (ICR)SSBP2 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSBP2
EVEXSSBP2
GoPubMedSSBP2
iHOPSSBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:29:14 CET 2017

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