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SSBP2 (single stranded DNA binding protein 2)

Identity

Alias (NCBI)HSPC116
SOSS-B2
HGNC (Hugo) SSBP2
HGNC Alias symbHSPC116
HGNC Previous namesingle-stranded DNA-binding protein 2
 single-stranded DNA binding protein 2
LocusID (NCBI) 23635
Atlas_Id 46000
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 81412807 and ends at 81751253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SSBP2 (5q14.1)::FER (5q21.3)SSBP2 (5q14.1)::JAK2 (9p24.1)SSBP2 (5q14.1)::LGALS2 (22q13.1)
SSBP2 (5q14.1)::NTRK1 (1q23.1)SSBP2 (5q14.1)::SERINC5 (5q14.1)SSBP2 (5q14.1)::SSBP2 (5q14.1)
SSBP2 (5q14.1)::WIPF3 (7p14.3)SSBP2 5q14.1::JAK2 9p24.1SSBP2 5q14.1::LGALS2 22q13.1
SSBP2 5q14.1::NTRK1 1q23.1SSBP2 5q14.1::SERINC5 5q14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(5;9)(q14.1;p24) SSBP2::JAK2
t(5;5)(q14;q21) SSBP2::FER
t(5;5)(q14;q32) SSBP2::CSF1R


External links

Nomenclature
HGNC (Hugo)SSBP2   15831
Cards
Entrez_Gene (NCBI)SSBP2    single stranded DNA binding protein 2
AliasesHSPC116; SOSS-B2
GeneCards (Weizmann)SSBP2
Ensembl hg19 (Hinxton)ENSG00000145687 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145687 [Gene_View]  ENSG00000145687 [Sequence]  chr5:81412807-81751253 [Contig_View]  SSBP2 [Vega]
ICGC DataPortalENSG00000145687
TCGA cBioPortalSSBP2
AceView (NCBI)SSBP2
Genatlas (Paris)SSBP2
SOURCE (Princeton)SSBP2
Genetics Home Reference (NIH)SSBP2
Genomic and cartography
GoldenPath hg38 (UCSC)SSBP2  -     chr5:81412807-81751253 -  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSBP2  -     5q14.1   [Description]    (hg19-Feb_2009)
GoldenPathSSBP2 - 5q14.1 [CytoView hg19]  SSBP2 - 5q14.1 [CytoView hg38]
ImmunoBaseENSG00000145687
Genome Data Viewer NCBISSBP2 [Mapview hg19]  
OMIM607389   
Gene and transcription
Genbank (Entrez)AA013030 AF077048 AF161465 AK074537 AK293544
RefSeq transcript (Entrez)NM_001256732 NM_001256733 NM_001256734 NM_001256735 NM_001256736 NM_001345886 NM_001394350 NM_001394351 NM_001394352 NM_012446
Consensus coding sequences : CCDS (NCBI)SSBP2
Gene ExpressionSSBP2 [ NCBI-GEO ]   SSBP2 [ EBI - ARRAY_EXPRESS ]   SSBP2 [ SEEK ]   SSBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSBP2 [ Firebrowse - Broad ]
GenevisibleExpression of SSBP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23635
GTEX Portal (Tissue expression)SSBP2
Human Protein AtlasENSG00000145687-SSBP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSBP2
Human Protein Atlas [tissue]ENSG00000145687-SSBP2 [tissue]
HPRD09577
Protein Interaction databases
BioGRIDSSBP2
STRING (EMBL)SSBP2
ZODIACSSBP2
Ontologies - Pathways
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSSBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 13:00:54 CET 2022

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