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SSBP3-AS1 (SSBP3 antisense RNA 1)

Identity

Alias_namesC1orf191
chromosome 1 open reading frame 191
Alias_symbol (synonym)MSTP128
Other aliasMST128
HGNC (Hugo) SSBP3-AS1
LocusID (NCBI) 619518
Atlas_Id 74254
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54238037 and ends at 54239063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSBP3-AS1   32328
Cards
Entrez_Gene (NCBI)SSBP3-AS1  619518  SSBP3 antisense RNA 1
AliasesC1orf191; MST128; MSTP128
GeneCards (Weizmann)SSBP3-AS1
Ensembl hg19 (Hinxton)ENSG00000198711 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198711 [Gene_View]  chr1:54238037-54239063 [Contig_View]  SSBP3-AS1 [Vega]
ICGC DataPortalENSG00000198711
TCGA cBioPortalSSBP3-AS1
AceView (NCBI)SSBP3-AS1
Genatlas (Paris)SSBP3-AS1
WikiGenes619518
SOURCE (Princeton)SSBP3-AS1
Genetics Home Reference (NIH)SSBP3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SSBP3-AS1  -     chr1:54238037-54239063 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSBP3-AS1  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblSSBP3-AS1 - 1p32.3 [CytoView hg19]  SSBP3-AS1 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBISSBP3-AS1 [Mapview hg19]  SSBP3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF176918
RefSeq transcript (Entrez)NM_001034847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSBP3-AS1
Cluster EST : UnigeneHs.591438 [ NCBI ]
CGAP (NCI)Hs.591438
Alternative Splicing GalleryENSG00000198711
Gene ExpressionSSBP3-AS1 [ NCBI-GEO ]   SSBP3-AS1 [ EBI - ARRAY_EXPRESS ]   SSBP3-AS1 [ SEEK ]   SSBP3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSBP3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619518
GTEX Portal (Tissue expression)SSBP3-AS1
Human Protein AtlasENSG00000198711-SSBP3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2R9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2R9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2R9
Splice isoforms : SwissVarQ7Z2R9
PhosPhoSitePlusQ7Z2R9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSBP3-AS1
DMDM Disease mutations619518
Blocks (Seattle)SSBP3-AS1
SuperfamilyQ7Z2R9
Human Protein Atlas [tissue]ENSG00000198711-SSBP3-AS1 [tissue]
Peptide AtlasQ7Z2R9
IPIIPI00384905   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2R9
IntAct (EBI)Q7Z2R9
FunCoupENSG00000198711
BioGRIDSSBP3-AS1
STRING (EMBL)SSBP3-AS1
ZODIACSSBP3-AS1
Ontologies - Pathways
QuickGOQ7Z2R9
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkSSBP3-AS1
Atlas of Cancer Signalling NetworkSSBP3-AS1
Wikipedia pathwaysSSBP3-AS1
Orthology - Evolution
OrthoDB619518
GeneTree (enSembl)ENSG00000198711
Phylogenetic Trees/Animal Genes : TreeFamSSBP3-AS1
HOVERGENQ7Z2R9
HOGENOMQ7Z2R9
Homologs : HomoloGeneSSBP3-AS1
Homology/Alignments : Family Browser (UCSC)SSBP3-AS1
Gene fusions - Rearrangements
Tumor Fusion PortalSSBP3-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSBP3-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSBP3-AS1
dbVarSSBP3-AS1
ClinVarSSBP3-AS1
1000_GenomesSSBP3-AS1 
Exome Variant ServerSSBP3-AS1
ExAC (Exome Aggregation Consortium)ENSG00000198711
GNOMAD BrowserENSG00000198711
Genetic variants : HAPMAP619518
Genomic Variants (DGV)SSBP3-AS1 [DGVbeta]
DECIPHERSSBP3-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSBP3-AS1 
Mutations
ICGC Data PortalSSBP3-AS1 
TCGA Data PortalSSBP3-AS1 
Broad Tumor PortalSSBP3-AS1
OASIS PortalSSBP3-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSBP3-AS1
BioMutasearch SSBP3-AS1
DgiDB (Drug Gene Interaction Database)SSBP3-AS1
DoCM (Curated mutations)SSBP3-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSBP3-AS1 (select a term)
intoGenSSBP3-AS1
Cancer3DSSBP3-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSSBP3-AS1
MedgenSSBP3-AS1
Genetic Testing Registry SSBP3-AS1
NextProtQ7Z2R9 [Medical]
TSGene619518
GENETestsSSBP3-AS1
Target ValidationSSBP3-AS1
Huge Navigator SSBP3-AS1 [HugePedia]
snp3D : Map Gene to Disease619518
BioCentury BCIQSSBP3-AS1
ClinGenSSBP3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD619518
Chemical/Pharm GKB GenePA142672402
Clinical trialSSBP3-AS1
Miscellaneous
canSAR (ICR)SSBP3-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSBP3-AS1
EVEXSSBP3-AS1
GoPubMedSSBP3-AS1
iHOPSSBP3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:03:13 CET 2017

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