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SSBP3 (single stranded DNA binding protein 3)

Identity

Alias_namessingle-stranded DNA-binding protein 3
Alias_symbol (synonym)CSDP
SSDP
FLJ10355
SSDP1
Other alias
HGNC (Hugo) SSBP3
LocusID (NCBI) 23648
Atlas_Id 56482
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54225431 and ends at 54406395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PTPRN2 (7q36.3) / SSBP3 (1p32.3)RPL13A (19q13.33) / SSBP3 (1p32.3)SSBP3 (1p32.3) / EDA (Xq13.1)
SSBP3 (1p32.3) / EIF4EBP2 (10q22.1)SSBP3 (1p32.3) / GADL1 (3p24.1)SSBP3 (1p32.3) / SLC27A4 (9q34.11)
SSBP3 (1p32.3) / SSBP3 (1p32.3)ST3GAL3 (1p34.1) / SSBP3 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSBP3   15674
Cards
Entrez_Gene (NCBI)SSBP3  23648  single stranded DNA binding protein 3
AliasesCSDP; SSDP; SSDP1
GeneCards (Weizmann)SSBP3
Ensembl hg19 (Hinxton)ENSG00000157216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157216 [Gene_View]  chr1:54225431-54406395 [Contig_View]  SSBP3 [Vega]
ICGC DataPortalENSG00000157216
TCGA cBioPortalSSBP3
AceView (NCBI)SSBP3
Genatlas (Paris)SSBP3
WikiGenes23648
SOURCE (Princeton)SSBP3
Genetics Home Reference (NIH)SSBP3
Genomic and cartography
GoldenPath hg38 (UCSC)SSBP3  -     chr1:54225431-54406395 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSBP3  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblSSBP3 - 1p32.3 [CytoView hg19]  SSBP3 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBISSBP3 [Mapview hg19]  SSBP3 [Mapview hg38]
OMIM607390   
Gene and transcription
Genbank (Entrez)AF086085 AF500116 AI565975 AK001217 AK093975
RefSeq transcript (Entrez)NM_001009955 NM_018070 NM_145716
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSBP3
Cluster EST : UnigeneHs.658676 [ NCBI ]
CGAP (NCI)Hs.658676
Alternative Splicing GalleryENSG00000157216
Gene ExpressionSSBP3 [ NCBI-GEO ]   SSBP3 [ EBI - ARRAY_EXPRESS ]   SSBP3 [ SEEK ]   SSBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)SSBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23648
GTEX Portal (Tissue expression)SSBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWW4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWW4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWW4
Splice isoforms : SwissVarQ9BWW4
PhosPhoSitePlusQ9BWW4
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)LisH    SSDP_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)SSBP3
DMDM Disease mutations23648
Blocks (Seattle)SSBP3
SuperfamilyQ9BWW4
Human Protein AtlasENSG00000157216
Peptide AtlasQ9BWW4
HPRD09578
IPIIPI00157304   IPI00215675   IPI00215676   IPI00514870   IPI00647818   IPI00980613   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWW4
IntAct (EBI)Q9BWW4
FunCoupENSG00000157216
BioGRIDSSBP3
STRING (EMBL)SSBP3
ZODIACSSBP3
Ontologies - Pathways
QuickGOQ9BWW4
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  hematopoietic progenitor cell differentiation  single-stranded DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  protein complex assembly  positive regulation of cell proliferation  prechordal plate formation  midbrain-hindbrain boundary initiation  protein complex  positive regulation of transcription from RNA polymerase II promoter  head development  head morphogenesis  positive regulation of anterior head development  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  hematopoietic progenitor cell differentiation  single-stranded DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  protein complex assembly  positive regulation of cell proliferation  prechordal plate formation  midbrain-hindbrain boundary initiation  protein complex  positive regulation of transcription from RNA polymerase II promoter  head development  head morphogenesis  positive regulation of anterior head development  
NDEx NetworkSSBP3
Atlas of Cancer Signalling NetworkSSBP3
Wikipedia pathwaysSSBP3
Orthology - Evolution
OrthoDB23648
GeneTree (enSembl)ENSG00000157216
Phylogenetic Trees/Animal Genes : TreeFamSSBP3
HOVERGENQ9BWW4
HOGENOMQ9BWW4
Homologs : HomoloGeneSSBP3
Homology/Alignments : Family Browser (UCSC)SSBP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSBP3
dbVarSSBP3
ClinVarSSBP3
1000_GenomesSSBP3 
Exome Variant ServerSSBP3
ExAC (Exome Aggregation Consortium)SSBP3 (select the gene name)
Genetic variants : HAPMAP23648
Genomic Variants (DGV)SSBP3 [DGVbeta]
DECIPHERSSBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSBP3 
Mutations
ICGC Data PortalSSBP3 
TCGA Data PortalSSBP3 
Broad Tumor PortalSSBP3
OASIS PortalSSBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSBP3
DgiDB (Drug Gene Interaction Database)SSBP3
DoCM (Curated mutations)SSBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSBP3 (select a term)
intoGenSSBP3
Cancer3DSSBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607390   
Orphanet
MedgenSSBP3
Genetic Testing Registry SSBP3
NextProtQ9BWW4 [Medical]
TSGene23648
GENETestsSSBP3
Target ValidationSSBP3
Huge Navigator SSBP3 [HugePedia]
snp3D : Map Gene to Disease23648
BioCentury BCIQSSBP3
ClinGenSSBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23648
Chemical/Pharm GKB GenePA38017
Clinical trialSSBP3
Miscellaneous
canSAR (ICR)SSBP3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSBP3
EVEXSSBP3
GoPubMedSSBP3
iHOPSSBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:06 CEST 2017

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