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SSBP4 (single stranded DNA binding protein 4)

Identity

Other alias-
HGNC (Hugo) SSBP4
LocusID (NCBI) 170463
Atlas_Id 74255
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18419336 and ends at 18434562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF8 (19q13.43) / SSBP4 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSBP4   15676
Cards
Entrez_Gene (NCBI)SSBP4  170463  single stranded DNA binding protein 4
Aliases
GeneCards (Weizmann)SSBP4
Ensembl hg19 (Hinxton)ENSG00000130511 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130511 [Gene_View]  chr19:18419336-18434562 [Contig_View]  SSBP4 [Vega]
ICGC DataPortalENSG00000130511
TCGA cBioPortalSSBP4
AceView (NCBI)SSBP4
Genatlas (Paris)SSBP4
WikiGenes170463
SOURCE (Princeton)SSBP4
Genetics Home Reference (NIH)SSBP4
Genomic and cartography
GoldenPath hg38 (UCSC)SSBP4  -     chr19:18419336-18434562 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSBP4  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblSSBP4 - 19p13.11 [CytoView hg19]  SSBP4 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBISSBP4 [Mapview hg19]  SSBP4 [Mapview hg38]
OMIM607391   
Gene and transcription
Genbank (Entrez)AK098429 BC000274 BF207000 BM851755 BQ068310
RefSeq transcript (Entrez)NM_001009998 NM_032627
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSBP4
Cluster EST : UnigeneHs.515259 [ NCBI ]
CGAP (NCI)Hs.515259
Alternative Splicing GalleryENSG00000130511
Gene ExpressionSSBP4 [ NCBI-GEO ]   SSBP4 [ EBI - ARRAY_EXPRESS ]   SSBP4 [ SEEK ]   SSBP4 [ MEM ]
Gene Expression Viewer (FireBrowse)SSBP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170463
GTEX Portal (Tissue expression)SSBP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWG4
Splice isoforms : SwissVarQ9BWG4
PhosPhoSitePlusQ9BWG4
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)LisH    SSDP_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)SSBP4
DMDM Disease mutations170463
Blocks (Seattle)SSBP4
SuperfamilyQ9BWG4
Human Protein AtlasENSG00000130511
Peptide AtlasQ9BWG4
HPRD09579
IPIIPI00013257   IPI00032677   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWG4
IntAct (EBI)Q9BWG4
FunCoupENSG00000130511
BioGRIDSSBP4
STRING (EMBL)SSBP4
ZODIACSSBP4
Ontologies - Pathways
QuickGOQ9BWG4
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  single-stranded DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  single-stranded DNA binding  protein binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkSSBP4
Atlas of Cancer Signalling NetworkSSBP4
Wikipedia pathwaysSSBP4
Orthology - Evolution
OrthoDB170463
GeneTree (enSembl)ENSG00000130511
Phylogenetic Trees/Animal Genes : TreeFamSSBP4
HOVERGENQ9BWG4
HOGENOMQ9BWG4
Homologs : HomoloGeneSSBP4
Homology/Alignments : Family Browser (UCSC)SSBP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSBP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSBP4
dbVarSSBP4
ClinVarSSBP4
1000_GenomesSSBP4 
Exome Variant ServerSSBP4
ExAC (Exome Aggregation Consortium)SSBP4 (select the gene name)
Genetic variants : HAPMAP170463
Genomic Variants (DGV)SSBP4 [DGVbeta]
DECIPHERSSBP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSBP4 
Mutations
ICGC Data PortalSSBP4 
TCGA Data PortalSSBP4 
Broad Tumor PortalSSBP4
OASIS PortalSSBP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSBP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSBP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSBP4
DgiDB (Drug Gene Interaction Database)SSBP4
DoCM (Curated mutations)SSBP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSBP4 (select a term)
intoGenSSBP4
Cancer3DSSBP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607391   
Orphanet
MedgenSSBP4
Genetic Testing Registry SSBP4
NextProtQ9BWG4 [Medical]
TSGene170463
GENETestsSSBP4
Target ValidationSSBP4
Huge Navigator SSBP4 [HugePedia]
snp3D : Map Gene to Disease170463
BioCentury BCIQSSBP4
ClinGenSSBP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170463
Chemical/Pharm GKB GenePA38018
Clinical trialSSBP4
Miscellaneous
canSAR (ICR)SSBP4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSBP4
EVEXSSBP4
GoPubMedSSBP4
iHOPSSBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:12 CEST 2017

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