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SSC4D (scavenger receptor cysteine rich family, 4 domains)

Identity

Alias_namesSRCRB4D
scavenger receptor cysteine rich domain containing, group B (4 domains)
scavenger receptor cysteine rich family, 4 domains
Alias_symbol (synonym)SRCRB-S4D
S4D-SRCRB
Other alias
HGNC (Hugo) SSC4D
LocusID (NCBI) 136853
Atlas_Id 74256
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 76018646 and ends at 76039012 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSC4D   14461
Cards
Entrez_Gene (NCBI)SSC4D  136853  scavenger receptor cysteine rich family, 4 domains
AliasesS4D-SRCRB; SRCRB-S4D; SRCRB4D
GeneCards (Weizmann)SSC4D
Ensembl hg19 (Hinxton)ENSG00000146700 [Gene_View]  chr7:76018646-76039012 [Contig_View]  SSC4D [Vega]
Ensembl hg38 (Hinxton)ENSG00000146700 [Gene_View]  chr7:76018646-76039012 [Contig_View]  SSC4D [Vega]
ICGC DataPortalENSG00000146700
TCGA cBioPortalSSC4D
AceView (NCBI)SSC4D
Genatlas (Paris)SSC4D
WikiGenes136853
SOURCE (Princeton)SSC4D
Genetics Home Reference (NIH)SSC4D
Genomic and cartography
GoldenPath hg19 (UCSC)SSC4D  -     chr7:76018646-76039012 -  7q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSC4D  -     7q11.23   [Description]    (hg38-Dec_2013)
EnsemblSSC4D - 7q11.23 [CytoView hg19]  SSC4D - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBISSC4D [Mapview hg19]  SSC4D [Mapview hg38]
OMIM607639   
Gene and transcription
Genbank (Entrez)AJ312755 AK172783 BC015651 BC113840 BC167843
RefSeq transcript (Entrez)NM_080744
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SSC4D
Cluster EST : UnigeneHs.567684 [ NCBI ]
CGAP (NCI)Hs.567684
Alternative Splicing GalleryENSG00000146700
Gene ExpressionSSC4D [ NCBI-GEO ]   SSC4D [ EBI - ARRAY_EXPRESS ]   SSC4D [ SEEK ]   SSC4D [ MEM ]
Gene Expression Viewer (FireBrowse)SSC4D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136853
GTEX Portal (Tissue expression)SSC4D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTU2
Splice isoforms : SwissVarQ8WTU2
PhosPhoSitePlusQ8WTU2
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)SSC4D
DMDM Disease mutations136853
Blocks (Seattle)SSC4D
SuperfamilyQ8WTU2
Human Protein AtlasENSG00000146700
Peptide AtlasQ8WTU2
HPRD06364
IPIIPI00102827   IPI00884973   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTU2
IntAct (EBI)Q8WTU2
FunCoupENSG00000146700
BioGRIDSSC4D
STRING (EMBL)SSC4D
ZODIACSSC4D
Ontologies - Pathways
QuickGOQ8WTU2
Ontology : AmiGOscavenger receptor activity  receptor-mediated endocytosis  membrane  extracellular exosome  
Ontology : EGO-EBIscavenger receptor activity  receptor-mediated endocytosis  membrane  extracellular exosome  
NDEx NetworkSSC4D
Atlas of Cancer Signalling NetworkSSC4D
Wikipedia pathwaysSSC4D
Orthology - Evolution
OrthoDB136853
GeneTree (enSembl)ENSG00000146700
Phylogenetic Trees/Animal Genes : TreeFamSSC4D
HOVERGENQ8WTU2
HOGENOMQ8WTU2
Homologs : HomoloGeneSSC4D
Homology/Alignments : Family Browser (UCSC)SSC4D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSC4D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSC4D
dbVarSSC4D
ClinVarSSC4D
1000_GenomesSSC4D 
Exome Variant ServerSSC4D
ExAC (Exome Aggregation Consortium)SSC4D (select the gene name)
Genetic variants : HAPMAP136853
Genomic Variants (DGV)SSC4D [DGVbeta]
DECIPHER (Syndromes)7:76018646-76039012  ENSG00000146700
CONAN: Copy Number AnalysisSSC4D 
Mutations
ICGC Data PortalSSC4D 
TCGA Data PortalSSC4D 
Broad Tumor PortalSSC4D
OASIS PortalSSC4D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSC4D
BioMutasearch SSC4D
DgiDB (Drug Gene Interaction Database)SSC4D
DoCM (Curated mutations)SSC4D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSC4D (select a term)
intoGenSSC4D
Cancer3DSSC4D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607639   
Orphanet
MedgenSSC4D
Genetic Testing Registry SSC4D
NextProtQ8WTU2 [Medical]
TSGene136853
GENETestsSSC4D
Huge Navigator SSC4D [HugePedia]
snp3D : Map Gene to Disease136853
BioCentury BCIQSSC4D
ClinGenSSC4D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136853
Chemical/Pharm GKB GenePA37883
Clinical trialSSC4D
Miscellaneous
canSAR (ICR)SSC4D (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSC4D
EVEXSSC4D
GoPubMedSSC4D
iHOPSSC4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:46:45 CET 2017

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