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SSFA2 (sperm specific antigen 2)

Identity

Alias_symbol (synonym)CS-1
SPAG13
KRAP
KIAA1927
Other aliasCS1
HGNC (Hugo) SSFA2
LocusID (NCBI) 6744
Atlas_Id 50025
Location 2q31.3  [Link to chromosome band 2q31]
Location_base_pair Starts at 182756443 and ends at 182795464 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LARGE (22q12.3) / SSFA2 (2q31.3)ROBO1 (3p12.3) / SSFA2 (2q31.3)SSFA2 (2q31.3) / PPP1R1C (2q31.3)
SSFA2 (2q31.3) / SPARCL1 (4q22.1)SSFA2 (2q31.3) / SSFA2 (2q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSFA2   11319
Cards
Entrez_Gene (NCBI)SSFA2  6744  sperm specific antigen 2
AliasesCS-1; CS1; KRAP; SPAG13
GeneCards (Weizmann)SSFA2
Ensembl hg19 (Hinxton)ENSG00000138434 [Gene_View]  chr2:182756443-182795464 [Contig_View]  SSFA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138434 [Gene_View]  chr2:182756443-182795464 [Contig_View]  SSFA2 [Vega]
ICGC DataPortalENSG00000138434
TCGA cBioPortalSSFA2
AceView (NCBI)SSFA2
Genatlas (Paris)SSFA2
WikiGenes6744
SOURCE (Princeton)SSFA2
Genetics Home Reference (NIH)SSFA2
Genomic and cartography
GoldenPath hg19 (UCSC)SSFA2  -     chr2:182756443-182795464 +  2q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSFA2  -     2q31.3   [Description]    (hg38-Dec_2013)
EnsemblSSFA2 - 2q31.3 [CytoView hg19]  SSFA2 - 2q31.3 [CytoView hg38]
Mapping of homologs : NCBISSFA2 [Mapview hg19]  SSFA2 [Mapview hg38]
OMIM118990   
Gene and transcription
Genbank (Entrez)AB067514 AB116937 AK091197 AK093143 AK097375
RefSeq transcript (Entrez)NM_001130445 NM_001287503 NM_001287504 NM_001287505 NM_006751
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)SSFA2
Cluster EST : UnigeneHs.196983 [ NCBI ]
CGAP (NCI)Hs.196983
Alternative Splicing GalleryENSG00000138434
Gene ExpressionSSFA2 [ NCBI-GEO ]   SSFA2 [ EBI - ARRAY_EXPRESS ]   SSFA2 [ SEEK ]   SSFA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSFA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6744
GTEX Portal (Tissue expression)SSFA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP28290   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP28290  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP28290
Splice isoforms : SwissVarP28290
PhosPhoSitePlusP28290
Domains : Interpro (EBI)IP3R-bd    SSFA2    SSFA2_C   
Domain families : Pfam (Sanger)KRAP_IP3R_bind (PF14722)    SSFA2_C (PF14723)   
Domain families : Pfam (NCBI)pfam14722    pfam14723   
Conserved Domain (NCBI)SSFA2
DMDM Disease mutations6744
Blocks (Seattle)SSFA2
SuperfamilyP28290
Human Protein AtlasENSG00000138434
Peptide AtlasP28290
HPRD00353
IPIIPI00400812   IPI00830086   IPI00386170   IPI00908471   IPI00918003   IPI00917860   IPI01010373   IPI00916035   IPI00917618   
Protein Interaction databases
DIP (DOE-UCLA)P28290
IntAct (EBI)P28290
FunCoupENSG00000138434
BioGRIDSSFA2
STRING (EMBL)SSFA2
ZODIACSSFA2
Ontologies - Pathways
QuickGOP28290
Ontology : AmiGOreceptor binding  nucleus  cytoplasm  plasma membrane  actin filament binding  
Ontology : EGO-EBIreceptor binding  nucleus  cytoplasm  plasma membrane  actin filament binding  
NDEx NetworkSSFA2
Atlas of Cancer Signalling NetworkSSFA2
Wikipedia pathwaysSSFA2
Orthology - Evolution
OrthoDB6744
GeneTree (enSembl)ENSG00000138434
Phylogenetic Trees/Animal Genes : TreeFamSSFA2
HOVERGENP28290
HOGENOMP28290
Homologs : HomoloGeneSSFA2
Homology/Alignments : Family Browser (UCSC)SSFA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSFA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSFA2
dbVarSSFA2
ClinVarSSFA2
1000_GenomesSSFA2 
Exome Variant ServerSSFA2
ExAC (Exome Aggregation Consortium)SSFA2 (select the gene name)
Genetic variants : HAPMAP6744
Genomic Variants (DGV)SSFA2 [DGVbeta]
DECIPHER (Syndromes)2:182756443-182795464  ENSG00000138434
CONAN: Copy Number AnalysisSSFA2 
Mutations
ICGC Data PortalSSFA2 
TCGA Data PortalSSFA2 
Broad Tumor PortalSSFA2
OASIS PortalSSFA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSFA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSFA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSFA2
DgiDB (Drug Gene Interaction Database)SSFA2
DoCM (Curated mutations)SSFA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSFA2 (select a term)
intoGenSSFA2
Cancer3DSSFA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM118990   
Orphanet
MedgenSSFA2
Genetic Testing Registry SSFA2
NextProtP28290 [Medical]
TSGene6744
GENETestsSSFA2
Huge Navigator SSFA2 [HugePedia]
snp3D : Map Gene to Disease6744
BioCentury BCIQSSFA2
ClinGenSSFA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6744
Chemical/Pharm GKB GenePA36143
Clinical trialSSFA2
Miscellaneous
canSAR (ICR)SSFA2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSFA2
EVEXSSFA2
GoPubMedSSFA2
iHOPSSFA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:55 CEST 2017

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