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SSFA2 (-)

Identity

Alias_symbol (synonym)CS-1
SPAG13
KRAP
KIAA1927
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 6744
Atlas_Id 50025
Location -  [Link to chromosome band ]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LARGE (22q12.3) / SSFA2 (2q31.3)ROBO1 (3p12.3) / SSFA2 (2q31.3)SSFA2 (2q31.3) / PPP1R1C (2q31.3)
SSFA2 (2q31.3) / SPARCL1 (4q22.1)SSFA2 (2q31.3) / SSFA2 (2q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)SSFA2  6744  -
Aliases
GeneCards (Weizmann)SSFA2
Ensembl hg19 (Hinxton)ENSG00000138434 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138434 [Gene_View]  ENSG00000138434 [Sequence]  - [Contig_View]  SSFA2 [Vega]
ICGC DataPortalENSG00000138434
TCGA cBioPortalSSFA2
AceView (NCBI)SSFA2
Genatlas (Paris)SSFA2
WikiGenes6744
SOURCE (Princeton)SSFA2
Genetics Home Reference (NIH)SSFA2
Genomic and cartography
GoldenPath hg38 (UCSC)SSFA2  -  
GoldenPath hg19 (UCSC)SSFA2  -  
EnsemblSSFA2 - [CytoView hg19]  SSFA2 - [CytoView hg38]
Mapping of homologs : NCBISSFA2 [Mapview hg19]  SSFA2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSFA2
Alternative Splicing GalleryENSG00000138434
Gene ExpressionSSFA2 [ NCBI-GEO ]   SSFA2 [ EBI - ARRAY_EXPRESS ]   SSFA2 [ SEEK ]   SSFA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSFA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6744
GTEX Portal (Tissue expression)SSFA2
Human Protein AtlasENSG00000138434-SSFA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSFA2
DMDM Disease mutations6744
Blocks (Seattle)SSFA2
Human Protein Atlas [tissue]ENSG00000138434-SSFA2 [tissue]
HPRD00353
Protein Interaction databases
FunCoupENSG00000138434
BioGRIDSSFA2
STRING (EMBL)SSFA2
ZODIACSSFA2
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease6744
BioCentury BCIQSSFA2
ClinGenSSFA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6744
Clinical trialSSFA2
Miscellaneous
canSAR (ICR)SSFA2 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSFA2
EVEXSSFA2
GoPubMedSSFA2
iHOPSSFA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:54:58 CEST 2018

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