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SSH3 (slingshot protein phosphatase 3)

Identity

Alias_namesslingshot homolog 3 (Drosophila)
Alias_symbol (synonym)FLJ20515
FLJ10928
Other aliasSSH3L
HGNC (Hugo) SSH3
LocusID (NCBI) 54961
Atlas_Id 78478
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 67303448 and ends at 67312607 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL21 (11q13.3) / SSH3 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSH3   30581
Cards
Entrez_Gene (NCBI)SSH3  54961  slingshot protein phosphatase 3
AliasesSSH3L
GeneCards (Weizmann)SSH3
Ensembl hg19 (Hinxton)ENSG00000172830 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172830 [Gene_View]  chr11:67303448-67312607 [Contig_View]  SSH3 [Vega]
ICGC DataPortalENSG00000172830
TCGA cBioPortalSSH3
AceView (NCBI)SSH3
Genatlas (Paris)SSH3
WikiGenes54961
SOURCE (Princeton)SSH3
Genetics Home Reference (NIH)SSH3
Genomic and cartography
GoldenPath hg38 (UCSC)SSH3  -     chr11:67303448-67312607 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSH3  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblSSH3 - 11q13.2 [CytoView hg19]  SSH3 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBISSH3 [Mapview hg19]  SSH3 [Mapview hg38]
OMIM606780   
Gene and transcription
Genbank (Entrez)AB072360 AB099291 AF085851 AK000522 AK001790
RefSeq transcript (Entrez)NM_017857 NM_018276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSH3
Cluster EST : UnigeneHs.29173 [ NCBI ]
CGAP (NCI)Hs.29173
Alternative Splicing GalleryENSG00000172830
Gene ExpressionSSH3 [ NCBI-GEO ]   SSH3 [ EBI - ARRAY_EXPRESS ]   SSH3 [ SEEK ]   SSH3 [ MEM ]
Gene Expression Viewer (FireBrowse)SSH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54961
GTEX Portal (Tissue expression)SSH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TE77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TE77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TE77
Splice isoforms : SwissVarQ8TE77
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ8TE77
Domaine pattern : Prosite (Expaxy)TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)    TYR_PHOSPHATASE_DUAL (PS50054)   
Domains : Interpro (EBI)DEK_C    Dual-sp_phosphatase_cat-dom    DUSP    Homeobox-like    Prot-tyrosine_phosphatase-like    Ssh    Tyr_Pase_AS    TYR_PHOSPHATASE_dom    TYR_PHOSPHATASE_DUAL_dom   
Domain families : Pfam (Sanger)DEK_C (PF08766)    DSPc (PF00782)   
Domain families : Pfam (NCBI)pfam08766    pfam00782   
Domain families : Smart (EMBL)DSPc (SM00195)  
Conserved Domain (NCBI)SSH3
DMDM Disease mutations54961
Blocks (Seattle)SSH3
SuperfamilyQ8TE77
Human Protein AtlasENSG00000172830
Peptide AtlasQ8TE77
HPRD09488
IPIIPI00218486   IPI00171057   IPI00655638   IPI00016485   IPI00385839   IPI00982240   IPI00953146   IPI00981541   IPI00982634   
Protein Interaction databases
DIP (DOE-UCLA)Q8TE77
IntAct (EBI)Q8TE77
FunCoupENSG00000172830
BioGRIDSSH3
STRING (EMBL)SSH3
ZODIACSSH3
Ontologies - Pathways
QuickGOQ8TE77
Ontology : AmiGOactin binding  protein tyrosine phosphatase activity  nucleus  cytoplasm  cytoskeleton  regulation of actin polymerization or depolymerization  protein tyrosine/serine/threonine phosphatase activity  regulation of lamellipodium assembly  peptidyl-tyrosine dephosphorylation  regulation of axonogenesis  
Ontology : EGO-EBIactin binding  protein tyrosine phosphatase activity  nucleus  cytoplasm  cytoskeleton  regulation of actin polymerization or depolymerization  protein tyrosine/serine/threonine phosphatase activity  regulation of lamellipodium assembly  peptidyl-tyrosine dephosphorylation  regulation of axonogenesis  
Pathways : KEGGRegulation of actin cytoskeleton   
NDEx NetworkSSH3
Atlas of Cancer Signalling NetworkSSH3
Wikipedia pathwaysSSH3
Orthology - Evolution
OrthoDB54961
GeneTree (enSembl)ENSG00000172830
Phylogenetic Trees/Animal Genes : TreeFamSSH3
HOVERGENQ8TE77
HOGENOMQ8TE77
Homologs : HomoloGeneSSH3
Homology/Alignments : Family Browser (UCSC)SSH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSH3
dbVarSSH3
ClinVarSSH3
1000_GenomesSSH3 
Exome Variant ServerSSH3
ExAC (Exome Aggregation Consortium)SSH3 (select the gene name)
Genetic variants : HAPMAP54961
Genomic Variants (DGV)SSH3 [DGVbeta]
DECIPHERSSH3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSH3 
Mutations
ICGC Data PortalSSH3 
TCGA Data PortalSSH3 
Broad Tumor PortalSSH3
OASIS PortalSSH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSH3
DgiDB (Drug Gene Interaction Database)SSH3
DoCM (Curated mutations)SSH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSH3 (select a term)
intoGenSSH3
Cancer3DSSH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606780   
Orphanet
MedgenSSH3
Genetic Testing Registry SSH3
NextProtQ8TE77 [Medical]
TSGene54961
GENETestsSSH3
Target ValidationSSH3
Huge Navigator SSH3 [HugePedia]
snp3D : Map Gene to Disease54961
BioCentury BCIQSSH3
ClinGenSSH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54961
Chemical/Pharm GKB GenePA134929326
Clinical trialSSH3
Miscellaneous
canSAR (ICR)SSH3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSH3
EVEXSSH3
GoPubMedSSH3
iHOPSSH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:44:13 CEST 2017

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