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SSMEM1 (serine rich single-pass membrane protein 1)

Identity

Alias_namesC7orf45
chromosome 7 open reading frame 45
Alias_symbol (synonym)FLJ40316
Other alias
HGNC (Hugo) SSMEM1
LocusID (NCBI) 136263
Atlas_Id 74259
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 130207864 and ends at 130216844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSMEM1   29580
Cards
Entrez_Gene (NCBI)SSMEM1  136263  serine rich single-pass membrane protein 1
AliasesC7orf45
GeneCards (Weizmann)SSMEM1
Ensembl hg19 (Hinxton)ENSG00000165120 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165120 [Gene_View]  chr7:130207864-130216844 [Contig_View]  SSMEM1 [Vega]
ICGC DataPortalENSG00000165120
TCGA cBioPortalSSMEM1
AceView (NCBI)SSMEM1
Genatlas (Paris)SSMEM1
WikiGenes136263
SOURCE (Princeton)SSMEM1
Genetics Home Reference (NIH)SSMEM1
Genomic and cartography
GoldenPath hg38 (UCSC)SSMEM1  -     chr7:130207864-130216844 +  7q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSMEM1  -     7q32.2   [Description]    (hg19-Feb_2009)
EnsemblSSMEM1 - 7q32.2 [CytoView hg19]  SSMEM1 - 7q32.2 [CytoView hg38]
Mapping of homologs : NCBISSMEM1 [Mapview hg19]  SSMEM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097635 BC017587 HQ447418
RefSeq transcript (Entrez)NM_145268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSMEM1
Cluster EST : UnigeneHs.351816 [ NCBI ]
CGAP (NCI)Hs.351816
Alternative Splicing GalleryENSG00000165120
Gene ExpressionSSMEM1 [ NCBI-GEO ]   SSMEM1 [ EBI - ARRAY_EXPRESS ]   SSMEM1 [ SEEK ]   SSMEM1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSMEM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136263
GTEX Portal (Tissue expression)SSMEM1
Human Protein AtlasENSG00000165120-SSMEM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWF3
Splice isoforms : SwissVarQ8WWF3
PhosPhoSitePlusQ8WWF3
Domains : Interpro (EBI)DUF4636   
Domain families : Pfam (Sanger)DUF4636 (PF15468)   
Domain families : Pfam (NCBI)pfam15468   
Conserved Domain (NCBI)SSMEM1
DMDM Disease mutations136263
Blocks (Seattle)SSMEM1
SuperfamilyQ8WWF3
Human Protein Atlas [tissue]ENSG00000165120-SSMEM1 [tissue]
Peptide AtlasQ8WWF3
HPRD14060
IPIIPI00103324   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWF3
IntAct (EBI)Q8WWF3
FunCoupENSG00000165120
BioGRIDSSMEM1
STRING (EMBL)SSMEM1
ZODIACSSMEM1
Ontologies - Pathways
QuickGOQ8WWF3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSSMEM1
Atlas of Cancer Signalling NetworkSSMEM1
Wikipedia pathwaysSSMEM1
Orthology - Evolution
OrthoDB136263
GeneTree (enSembl)ENSG00000165120
Phylogenetic Trees/Animal Genes : TreeFamSSMEM1
HOVERGENQ8WWF3
HOGENOMQ8WWF3
Homologs : HomoloGeneSSMEM1
Homology/Alignments : Family Browser (UCSC)SSMEM1
Gene fusions - Rearrangements
Tumor Fusion PortalSSMEM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSMEM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSMEM1
dbVarSSMEM1
ClinVarSSMEM1
1000_GenomesSSMEM1 
Exome Variant ServerSSMEM1
ExAC (Exome Aggregation Consortium)ENSG00000165120
GNOMAD BrowserENSG00000165120
Genetic variants : HAPMAP136263
Genomic Variants (DGV)SSMEM1 [DGVbeta]
DECIPHERSSMEM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSMEM1 
Mutations
ICGC Data PortalSSMEM1 
TCGA Data PortalSSMEM1 
Broad Tumor PortalSSMEM1
OASIS PortalSSMEM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSMEM1
BioMutasearch SSMEM1
DgiDB (Drug Gene Interaction Database)SSMEM1
DoCM (Curated mutations)SSMEM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSMEM1 (select a term)
intoGenSSMEM1
Cancer3DSSMEM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETSSMEM1
MedgenSSMEM1
Genetic Testing Registry SSMEM1
NextProtQ8WWF3 [Medical]
TSGene136263
GENETestsSSMEM1
Target ValidationSSMEM1
Huge Navigator SSMEM1 [HugePedia]
snp3D : Map Gene to Disease136263
BioCentury BCIQSSMEM1
ClinGenSSMEM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136263
Chemical/Pharm GKB GenePA162380490
Clinical trialSSMEM1
Miscellaneous
canSAR (ICR)SSMEM1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSMEM1
EVEXSSMEM1
GoPubMedSSMEM1
iHOPSSMEM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:17:19 CET 2017

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