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SSNA1 (SS nuclear autoantigen 1)

Identity

Alias_namesSjogren's syndrome nuclear autoantigen 1
Sjogren syndrome nuclear autoantigen 1
Alias_symbol (synonym)NA14
N14
Other aliasNA-14
HGNC (Hugo) SSNA1
LocusID (NCBI) 8636
Atlas_Id 74260
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137188602 and ends at 137190370 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CA14 (1q21.2) / SSNA1 (9q34.3)SSNA1 (9q34.3) / SSNA1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSNA1   11321
Cards
Entrez_Gene (NCBI)SSNA1  8636  SS nuclear autoantigen 1
AliasesN14; NA-14; NA14
GeneCards (Weizmann)SSNA1
Ensembl hg19 (Hinxton)ENSG00000176101 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176101 [Gene_View]  chr9:137188602-137190370 [Contig_View]  SSNA1 [Vega]
ICGC DataPortalENSG00000176101
TCGA cBioPortalSSNA1
AceView (NCBI)SSNA1
Genatlas (Paris)SSNA1
WikiGenes8636
SOURCE (Princeton)SSNA1
Genetics Home Reference (NIH)SSNA1
Genomic and cartography
GoldenPath hg38 (UCSC)SSNA1  -     chr9:137188602-137190370 +  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSNA1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblSSNA1 - 9q34.3 [CytoView hg19]  SSNA1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISSNA1 [Mapview hg19]  SSNA1 [Mapview hg38]
OMIM610882   
Gene and transcription
Genbank (Entrez)BC000864 BC004118 BC015827 BT006766 CR542238
RefSeq transcript (Entrez)NM_003731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSNA1
Cluster EST : UnigeneHs.530314 [ NCBI ]
CGAP (NCI)Hs.530314
Alternative Splicing GalleryENSG00000176101
Gene ExpressionSSNA1 [ NCBI-GEO ]   SSNA1 [ EBI - ARRAY_EXPRESS ]   SSNA1 [ SEEK ]   SSNA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSNA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8636
GTEX Portal (Tissue expression)SSNA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43805   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43805  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43805
Splice isoforms : SwissVarO43805
PhosPhoSitePlusO43805
Domains : Interpro (EBI)P-loop_NTPase    SSNA1_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSNA1
DMDM Disease mutations8636
Blocks (Seattle)SSNA1
SuperfamilyO43805
Human Protein AtlasENSG00000176101
Peptide AtlasO43805
HPRD10251
IPIIPI00014437   IPI00976518   
Protein Interaction databases
DIP (DOE-UCLA)O43805
IntAct (EBI)O43805
FunCoupENSG00000176101
BioGRIDSSNA1
STRING (EMBL)SSNA1
ZODIACSSNA1
Ontologies - Pathways
QuickGOO43805
Ontology : AmiGOG2/M transition of mitotic cell cycle  protein binding  nucleus  centrosome  cytosol  ciliary basal body  intraciliary transport  identical protein binding  ciliary receptor clustering involved in smoothened signaling pathway  ciliary basal body docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  protein binding  nucleus  centrosome  cytosol  ciliary basal body  intraciliary transport  identical protein binding  ciliary receptor clustering involved in smoothened signaling pathway  ciliary basal body docking  
NDEx NetworkSSNA1
Atlas of Cancer Signalling NetworkSSNA1
Wikipedia pathwaysSSNA1
Orthology - Evolution
OrthoDB8636
GeneTree (enSembl)ENSG00000176101
Phylogenetic Trees/Animal Genes : TreeFamSSNA1
HOVERGENO43805
HOGENOMO43805
Homologs : HomoloGeneSSNA1
Homology/Alignments : Family Browser (UCSC)SSNA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSNA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSNA1
dbVarSSNA1
ClinVarSSNA1
1000_GenomesSSNA1 
Exome Variant ServerSSNA1
ExAC (Exome Aggregation Consortium)SSNA1 (select the gene name)
Genetic variants : HAPMAP8636
Genomic Variants (DGV)SSNA1 [DGVbeta]
DECIPHERSSNA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSNA1 
Mutations
ICGC Data PortalSSNA1 
TCGA Data PortalSSNA1 
Broad Tumor PortalSSNA1
OASIS PortalSSNA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSNA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSNA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSNA1
DgiDB (Drug Gene Interaction Database)SSNA1
DoCM (Curated mutations)SSNA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSNA1 (select a term)
intoGenSSNA1
Cancer3DSSNA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610882   
Orphanet
MedgenSSNA1
Genetic Testing Registry SSNA1
NextProtO43805 [Medical]
TSGene8636
GENETestsSSNA1
Target ValidationSSNA1
Huge Navigator SSNA1 [HugePedia]
snp3D : Map Gene to Disease8636
BioCentury BCIQSSNA1
ClinGenSSNA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8636
Chemical/Pharm GKB GenePA36145
Clinical trialSSNA1
Miscellaneous
canSAR (ICR)SSNA1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSNA1
EVEXSSNA1
GoPubMedSSNA1
iHOPSSNA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:40:32 CEST 2017

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