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SSPN (sarcospan)

Identity

Alias_namesKRAG
Kras oncogene-associated gene
Alias_symbol (synonym)SPN1
SPN2
Other aliasDAGA5
NSPN
HGNC (Hugo) SSPN
LocusID (NCBI) 8082
Atlas_Id 42396
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 26195336 and ends at 26234775 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAM9 (8p11.22) / SSPN (12p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSPN   11322
LRG (Locus Reference Genomic)LRG_209
Cards
Entrez_Gene (NCBI)SSPN  8082  sarcospan
AliasesDAGA5; KRAG; NSPN; SPN1; 
SPN2
GeneCards (Weizmann)SSPN
Ensembl hg19 (Hinxton)ENSG00000123096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123096 [Gene_View]  chr12:26195336-26234775 [Contig_View]  SSPN [Vega]
ICGC DataPortalENSG00000123096
TCGA cBioPortalSSPN
AceView (NCBI)SSPN
Genatlas (Paris)SSPN
WikiGenes8082
SOURCE (Princeton)SSPN
Genetics Home Reference (NIH)SSPN
Genomic and cartography
GoldenPath hg38 (UCSC)SSPN  -     chr12:26195336-26234775 +  12p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSPN  -     12p12.1   [Description]    (hg19-Feb_2009)
EnsemblSSPN - 12p12.1 [CytoView hg19]  SSPN - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBISSPN [Mapview hg19]  SSPN [Mapview hg38]
OMIM601599   
Gene and transcription
Genbank (Entrez)AF016028 AK092925 AK304667 AK314353 AL136756
RefSeq transcript (Entrez)NM_001135823 NM_005086
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSPN
Cluster EST : UnigeneHs.736914 [ NCBI ]
CGAP (NCI)Hs.736914
Alternative Splicing GalleryENSG00000123096
Gene ExpressionSSPN [ NCBI-GEO ]   SSPN [ EBI - ARRAY_EXPRESS ]   SSPN [ SEEK ]   SSPN [ MEM ]
Gene Expression Viewer (FireBrowse)SSPN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8082
GTEX Portal (Tissue expression)SSPN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14714   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14714  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14714
Splice isoforms : SwissVarQ14714
PhosPhoSitePlusQ14714
Domains : Interpro (EBI)CD20-like    Sarcospan   
Domain families : Pfam (Sanger)CD20 (PF04103)   
Domain families : Pfam (NCBI)pfam04103   
Conserved Domain (NCBI)SSPN
DMDM Disease mutations8082
Blocks (Seattle)SSPN
SuperfamilyQ14714
Human Protein AtlasENSG00000123096
Peptide AtlasQ14714
HPRD03359
IPIIPI00032994   IPI00218574   IPI00828122   IPI01014574   IPI00798120   IPI01010421   IPI01009502   
Protein Interaction databases
DIP (DOE-UCLA)Q14714
IntAct (EBI)Q14714
FunCoupENSG00000123096
BioGRIDSSPN
STRING (EMBL)SSPN
ZODIACSSPN
Ontologies - Pathways
QuickGOQ14714
Ontology : AmiGOintegral component of plasma membrane  muscle contraction  cell adhesion  dystrophin-associated glycoprotein complex  cell junction  transport vesicle  sarcolemma  postsynaptic membrane  
Ontology : EGO-EBIintegral component of plasma membrane  muscle contraction  cell adhesion  dystrophin-associated glycoprotein complex  cell junction  transport vesicle  sarcolemma  postsynaptic membrane  
NDEx NetworkSSPN
Atlas of Cancer Signalling NetworkSSPN
Wikipedia pathwaysSSPN
Orthology - Evolution
OrthoDB8082
GeneTree (enSembl)ENSG00000123096
Phylogenetic Trees/Animal Genes : TreeFamSSPN
HOVERGENQ14714
HOGENOMQ14714
Homologs : HomoloGeneSSPN
Homology/Alignments : Family Browser (UCSC)SSPN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSPN
dbVarSSPN
ClinVarSSPN
1000_GenomesSSPN 
Exome Variant ServerSSPN
ExAC (Exome Aggregation Consortium)SSPN (select the gene name)
Genetic variants : HAPMAP8082
Genomic Variants (DGV)SSPN [DGVbeta]
DECIPHERSSPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSPN 
Mutations
ICGC Data PortalSSPN 
TCGA Data PortalSSPN 
Broad Tumor PortalSSPN
OASIS PortalSSPN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSPN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSPN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSPN
DgiDB (Drug Gene Interaction Database)SSPN
DoCM (Curated mutations)SSPN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSPN (select a term)
intoGenSSPN
Cancer3DSSPN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601599   
Orphanet
MedgenSSPN
Genetic Testing Registry SSPN
NextProtQ14714 [Medical]
TSGene8082
GENETestsSSPN
Target ValidationSSPN
Huge Navigator SSPN [HugePedia]
snp3D : Map Gene to Disease8082
BioCentury BCIQSSPN
ClinGenSSPN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8082
Chemical/Pharm GKB GenePA36146
Clinical trialSSPN
Miscellaneous
canSAR (ICR)SSPN (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSPN
EVEXSSPN
GoPubMedSSPN
iHOPSSPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:31 CEST 2017

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