Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SSPO (SCO-spondin)

Identity

Alias_namesSCO-spondin homolog (Bos taurus)
Alias_symbol (synonym)SCO-spondin
KIAA0543
FLJ36112
Other alias-
HGNC (Hugo) SSPO
LocusID (NCBI) 23145
Atlas_Id 74261
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 149776042 and ends at 149833964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SSPO (7q36.1) / FLJ23867 (1q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSPO   21998
Cards
Entrez_Gene (NCBI)SSPO  23145  SCO-spondin
Aliases
GeneCards (Weizmann)SSPO
Ensembl hg19 (Hinxton)ENSG00000197558 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197558 [Gene_View]  chr7:149776042-149833964 [Contig_View]  SSPO [Vega]
ICGC DataPortalENSG00000197558
TCGA cBioPortalSSPO
AceView (NCBI)SSPO
Genatlas (Paris)SSPO
WikiGenes23145
SOURCE (Princeton)SSPO
Genetics Home Reference (NIH)SSPO
Genomic and cartography
GoldenPath hg38 (UCSC)SSPO  -     chr7:149776042-149833964 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSPO  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblSSPO - 7q36.1 [CytoView hg19]  SSPO - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBISSPO [Mapview hg19]  SSPO [Mapview hg38]
OMIM617356   
Gene and transcription
Genbank (Entrez)AB111888 AK093431 AK123170 AK124542 AK127639
RefSeq transcript (Entrez)NM_198455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSPO
Cluster EST : UnigeneHs.632022 [ NCBI ]
CGAP (NCI)Hs.632022
Alternative Splicing GalleryENSG00000197558
Gene ExpressionSSPO [ NCBI-GEO ]   SSPO [ EBI - ARRAY_EXPRESS ]   SSPO [ SEEK ]   SSPO [ MEM ]
Gene Expression Viewer (FireBrowse)SSPO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23145
GTEX Portal (Tissue expression)SSPO
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2VEC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2VEC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2VEC9
Splice isoforms : SwissVarA2VEC9
PhosPhoSitePlusA2VEC9
Domaine pattern : Prosite (Expaxy)CTCK_2 (PS01225)    EGF_1 (PS00022)    FA58C_3 (PS50022)    LDLRA_1 (PS01209)    LDLRA_2 (PS50068)    TSP1 (PS50092)    VWFC_1 (PS01208)    VWFC_2 (PS50184)    VWFD (PS51233)   
Domains : Interpro (EBI)Cys_knot_C    FA58C    Galactose-bd-like    LDLR_class-A_CS    LDrepeatLR_classA_rpt    Pacifastin_dom    SCO-spondin    TIL_dom    TSP1_rpt    Unchr_dom_Cys-rich    VWF_dom    VWF_type-D   
Domain families : Pfam (Sanger)C8 (PF08742)    F5_F8_type_C (PF00754)    Ldl_recept_a (PF00057)    TIL (PF01826)    TSP_1 (PF00090)    VWD (PF00094)   
Domain families : Pfam (NCBI)pfam08742    pfam00754    pfam00057    pfam01826    pfam00090    pfam00094   
Domain families : Smart (EMBL)C8 (SM00832)  FA58C (SM00231)  LDLa (SM00192)  TSP1 (SM00209)  VWC (SM00214)  VWC_out (SM00215)  VWD (SM00216)  
Conserved Domain (NCBI)SSPO
DMDM Disease mutations23145
Blocks (Seattle)SSPO
SuperfamilyA2VEC9
Human Protein AtlasENSG00000197558
Peptide AtlasA2VEC9
IPIIPI00843797   IPI00446753   IPI00445854   IPI00167837   
Protein Interaction databases
DIP (DOE-UCLA)A2VEC9
IntAct (EBI)A2VEC9
FunCoupENSG00000197558
BioGRIDSSPO
STRING (EMBL)SSPO
ZODIACSSPO
Ontologies - Pathways
QuickGOA2VEC9
Ontology : AmiGOextracellular space  cell adhesion  nervous system development  negative regulation of peptidase activity  cell differentiation  peptidase inhibitor activity  
Ontology : EGO-EBIextracellular space  cell adhesion  nervous system development  negative regulation of peptidase activity  cell differentiation  peptidase inhibitor activity  
NDEx NetworkSSPO
Atlas of Cancer Signalling NetworkSSPO
Wikipedia pathwaysSSPO
Orthology - Evolution
OrthoDB23145
GeneTree (enSembl)ENSG00000197558
Phylogenetic Trees/Animal Genes : TreeFamSSPO
HOVERGENA2VEC9
HOGENOMA2VEC9
Homologs : HomoloGeneSSPO
Homology/Alignments : Family Browser (UCSC)SSPO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSPO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSPO
dbVarSSPO
ClinVarSSPO
1000_GenomesSSPO 
Exome Variant ServerSSPO
ExAC (Exome Aggregation Consortium)SSPO (select the gene name)
Genetic variants : HAPMAP23145
Genomic Variants (DGV)SSPO [DGVbeta]
DECIPHERSSPO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSPO 
Mutations
ICGC Data PortalSSPO 
TCGA Data PortalSSPO 
Broad Tumor PortalSSPO
OASIS PortalSSPO [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSPO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSPO
DgiDB (Drug Gene Interaction Database)SSPO
DoCM (Curated mutations)SSPO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSPO (select a term)
intoGenSSPO
Cancer3DSSPO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617356   
Orphanet
MedgenSSPO
Genetic Testing Registry SSPO
NextProtA2VEC9 [Medical]
TSGene23145
GENETestsSSPO
Target ValidationSSPO
Huge Navigator SSPO [HugePedia]
snp3D : Map Gene to Disease23145
BioCentury BCIQSSPO
ClinGenSSPO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23145
Chemical/Pharm GKB GenePA142670865
Clinical trialSSPO
Miscellaneous
canSAR (ICR)SSPO (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSPO
EVEXSSPO
GoPubMedSSPO
iHOPSSPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:44:14 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.