Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SSR1 (signal sequence receptor subunit 1)

Identity

Alias (NCBI)TRAPA
HGNC (Hugo) SSR1
HGNC Alias symbTRAPA
HGNC Alias nametranslocon-associated protein alpha
HGNC Previous namesignal sequence receptor, alpha
LocusID (NCBI) 6745
Atlas_Id 42397
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 7281143 and ends at 7313199 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5AR1 (19q13.32) / SSR1 (6p24.3)DCN (12q21.33) / SSR1 (6p24.3)RNF165 (18q21.1) / SSR1 (6p24.3)
SSR1 (6p24.3) / AVL9 (7p14.3)SSR1 (6p24.3) / CAGE1 (6p24.3)SSR1 (6p24.3) / DMD (Xp21.2)
SSR1 (6p24.3) / FARS2 (6p25.1)SSR1 (6p24.3) / HPS3 (3q24)SSR1 (6p24.3) / NOTCH2 (1p12)
SSR1 (6p24.3) / PSMA1 (11p15.2)SSR1 (6p24.3) / RBFOX2 (22q12.3)SSR1 (6p24.3) / SRPK2 (7q22.3)
SSR1 (6p24.3) / SSR1 (6p24.3)SSR1 6p24.3 / CAGE1 6p24.3SSR1 6p24.3 / DMD Xp21.2
SSR1 6p24.3 / FARS2 6p25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SSR1   11323
Cards
Entrez_Gene (NCBI)SSR1    signal sequence receptor subunit 1
AliasesTRAPA
GeneCards (Weizmann)SSR1
Ensembl hg19 (Hinxton)ENSG00000124783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124783 [Gene_View]  ENSG00000124783 [Sequence]  chr6:7281143-7313199 [Contig_View]  SSR1 [Vega]
ICGC DataPortalENSG00000124783
TCGA cBioPortalSSR1
AceView (NCBI)SSR1
Genatlas (Paris)SSR1
SOURCE (Princeton)SSR1
Genetics Home Reference (NIH)SSR1
Genomic and cartography
GoldenPath hg38 (UCSC)SSR1  -     chr6:7281143-7313199 -  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSR1  -     6p24.3   [Description]    (hg19-Feb_2009)
GoldenPathSSR1 - 6p24.3 [CytoView hg19]  SSR1 - 6p24.3 [CytoView hg38]
ImmunoBaseENSG00000124783
Genome Data Viewer NCBISSR1 [Mapview hg19]  
OMIM600868   
Gene and transcription
Genbank (Entrez)AF156965 AJ420492 AK024294 AK025753 AK026687
RefSeq transcript (Entrez)NM_001292008 NM_003144
Consensus coding sequences : CCDS (NCBI)SSR1
Gene ExpressionSSR1 [ NCBI-GEO ]   SSR1 [ EBI - ARRAY_EXPRESS ]   SSR1 [ SEEK ]   SSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR1 [ Firebrowse - Broad ]
GenevisibleExpression of SSR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6745
GTEX Portal (Tissue expression)SSR1
Human Protein AtlasENSG00000124783-SSR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSR1
Human Protein Atlas [tissue]ENSG00000124783-SSR1 [tissue]
HPRD02924
Protein Interaction databases
BioGRIDSSR1
STRING (EMBL)SSR1
ZODIACSSR1
Ontologies - Pathways
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSSR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:33:15 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.