Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SSR1 (signal sequence receptor subunit 1)


HGNC (Hugo) SSR1
HGNC Alias symbTRAPA
HGNC Alias nametranslocon-associated protein alpha
HGNC Previous namesignal sequence receptor, alpha
LocusID (NCBI) 6745
Atlas_Id 42397
Location 6p24.3  [Link to chromosome band 6p24]
Location_base_pair Starts at 7281143 and ends at 7313199 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C5AR1 (19q13.32) / SSR1 (6p24.3)DCN (12q21.33) / SSR1 (6p24.3)RNF165 (18q21.1) / SSR1 (6p24.3)
SSR1 (6p24.3) / AVL9 (7p14.3)SSR1 (6p24.3) / CAGE1 (6p24.3)SSR1 (6p24.3) / DMD (Xp21.2)
SSR1 (6p24.3) / FARS2 (6p25.1)SSR1 (6p24.3) / HPS3 (3q24)SSR1 (6p24.3) / NOTCH2 (1p12)
SSR1 (6p24.3) / PSMA1 (11p15.2)SSR1 (6p24.3) / RBFOX2 (22q12.3)SSR1 (6p24.3) / SRPK2 (7q22.3)
SSR1 (6p24.3) / SSR1 (6p24.3)SSR1 6p24.3 / CAGE1 6p24.3SSR1 6p24.3 / DMD Xp21.2
SSR1 6p24.3 / FARS2 6p25.1


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)SSR1   11323
Entrez_Gene (NCBI)SSR1    signal sequence receptor subunit 1
GeneCards (Weizmann)SSR1
Ensembl hg19 (Hinxton)ENSG00000124783 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124783 [Gene_View]  ENSG00000124783 [Sequence]  chr6:7281143-7313199 [Contig_View]  SSR1 [Vega]
ICGC DataPortalENSG00000124783
TCGA cBioPortalSSR1
AceView (NCBI)SSR1
Genatlas (Paris)SSR1
SOURCE (Princeton)SSR1
Genetics Home Reference (NIH)SSR1
Genomic and cartography
GoldenPath hg38 (UCSC)SSR1  -     chr6:7281143-7313199 -  6p24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSR1  -     6p24.3   [Description]    (hg19-Feb_2009)
GoldenPathSSR1 - 6p24.3 [CytoView hg19]  SSR1 - 6p24.3 [CytoView hg38]
Genome Data Viewer NCBISSR1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF156965 AJ420492 AK024294 AK025753 AK026687
RefSeq transcript (Entrez)NM_001292008 NM_003144
Consensus coding sequences : CCDS (NCBI)SSR1
Gene ExpressionSSR1 [ NCBI-GEO ]   SSR1 [ EBI - ARRAY_EXPRESS ]   SSR1 [ SEEK ]   SSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR1 [ Firebrowse - Broad ]
GenevisibleExpression of SSR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6745
GTEX Portal (Tissue expression)SSR1
Human Protein AtlasENSG00000124783-SSR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSR1
Human Protein Atlas [tissue]ENSG00000124783-SSR1 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:15 CEST 2021

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