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SSR2 (signal sequence receptor subunit 2)

Identity

Alias (NCBI)HSD25
TLAP
TRAP-BETA
TRAPB
HGNC (Hugo) SSR2
HGNC Alias symbTLAP
TRAPB
HGNC Alias nametranslocon-associated protein beta
HGNC Previous namesignal sequence receptor, beta (translocon-associated protein beta)
LocusID (NCBI) 6746
Atlas_Id 42398
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156009048 and ends at 156020951 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF2 (1q22) / SSR2 (1q22)FUCA2 (6q24.2) / SSR2 (1q22)IGF2BP3 (7p15.3) / SSR2 (1q22)
PAPD7 (5p15.31) / SSR2 (1q22)SSR2 (1q22) / AAK1 (2p13.3)SSR2 (1q22) / SSR2 (1q22)
SSR2 (1q22) / ZNF738 (19p12)ARHGEF2 1q22 / SSR2 1q22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SSR2   11324
Cards
Entrez_Gene (NCBI)SSR2    signal sequence receptor subunit 2
AliasesHSD25; TLAP; TRAP-BETA; TRAPB
GeneCards (Weizmann)SSR2
Ensembl hg19 (Hinxton)ENSG00000163479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163479 [Gene_View]  ENSG00000163479 [Sequence]  chr1:156009048-156020951 [Contig_View]  SSR2 [Vega]
ICGC DataPortalENSG00000163479
TCGA cBioPortalSSR2
AceView (NCBI)SSR2
Genatlas (Paris)SSR2
SOURCE (Princeton)SSR2
Genetics Home Reference (NIH)SSR2
Genomic and cartography
GoldenPath hg38 (UCSC)SSR2  -     chr1:156009048-156020951 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSR2  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathSSR2 - 1q22 [CytoView hg19]  SSR2 - 1q22 [CytoView hg38]
ImmunoBaseENSG00000163479
Genome Data Viewer NCBISSR2 [Mapview hg19]  
OMIM600867   
Gene and transcription
Genbank (Entrez)AK092473 AK222600 AK300678 AK313821 AY251536
RefSeq transcript (Entrez)NM_003145
Consensus coding sequences : CCDS (NCBI)SSR2
Gene ExpressionSSR2 [ NCBI-GEO ]   SSR2 [ EBI - ARRAY_EXPRESS ]   SSR2 [ SEEK ]   SSR2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR2 [ Firebrowse - Broad ]
GenevisibleExpression of SSR2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6746
GTEX Portal (Tissue expression)SSR2
Human Protein AtlasENSG00000163479-SSR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43308   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43308  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43308
PhosPhoSitePlusP43308
Domains : Interpro (EBI)TRAP_beta   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSR2
SuperfamilyP43308
AlphaFold pdb e-kbP43308   
Human Protein Atlas [tissue]ENSG00000163479-SSR2 [tissue]
HPRD02923
Protein Interaction databases
DIP (DOE-UCLA)P43308
IntAct (EBI)P43308
BioGRIDSSR2
STRING (EMBL)SSR2
ZODIACSSR2
Ontologies - Pathways
QuickGOP43308
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  cotranslational protein targeting to membrane  integral component of membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  cotranslational protein targeting to membrane  integral component of membrane  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSSR2
Atlas of Cancer Signalling NetworkSSR2
Wikipedia pathwaysSSR2
Orthology - Evolution
OrthoDB6746
GeneTree (enSembl)ENSG00000163479
Phylogenetic Trees/Animal Genes : TreeFamSSR2
Homologs : HomoloGeneSSR2
Homology/Alignments : Family Browser (UCSC)SSR2
Gene fusions - Rearrangements
Fusion : QuiverSSR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSR2
dbVarSSR2
ClinVarSSR2
MonarchSSR2
1000_GenomesSSR2 
Exome Variant ServerSSR2
GNOMAD BrowserENSG00000163479
Varsome BrowserSSR2
ACMGSSR2 variants
VarityP43308
Genomic Variants (DGV)SSR2 [DGVbeta]
DECIPHERSSR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSR2 
Mutations
ICGC Data PortalSSR2 
TCGA Data PortalSSR2 
Broad Tumor PortalSSR2
OASIS PortalSSR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSR2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSSR2
Mutations and Diseases : HGMDSSR2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSSR2
DgiDB (Drug Gene Interaction Database)SSR2
DoCM (Curated mutations)SSR2
CIViC (Clinical Interpretations of Variants in Cancer)SSR2
Cancer3DSSR2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600867   
Orphanet
DisGeNETSSR2
MedgenSSR2
Genetic Testing Registry SSR2
NextProtP43308 [Medical]
GENETestsSSR2
Target ValidationSSR2
Huge Navigator SSR2 [HugePedia]
ClinGenSSR2
Clinical trials, drugs, therapy
MyCancerGenomeSSR2
Protein Interactions : CTDSSR2
Pharm GKB GenePA36148
PharosP43308
Clinical trialSSR2
Miscellaneous
canSAR (ICR)SSR2
HarmonizomeSSR2
DataMed IndexSSR2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSSR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:33:15 CEST 2021

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