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SSR2 (signal sequence receptor subunit 2)

Identity

Alias_namessignal sequence receptor
Alias_symbol (synonym)TLAP
TRAPB
Other aliasHSD25
TRAP-BETA
HGNC (Hugo) SSR2
LocusID (NCBI) 6746
Atlas_Id 42398
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156009048 and ends at 156020967 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGEF2 (1q22) / SSR2 (1q22)FUCA2 (6q24.2) / SSR2 (1q22)IGF2BP3 (7p15.3) / SSR2 (1q22)
PAPD7 (5p15.31) / SSR2 (1q22)SSR2 (1q22) / AAK1 (2p13.3)SSR2 (1q22) / SSR2 (1q22)
SSR2 (1q22) / ZNF738 (19p12)ARHGEF2 1q22 / SSR2 1q22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSR2   11324
Cards
Entrez_Gene (NCBI)SSR2  6746  signal sequence receptor subunit 2
AliasesHSD25; TLAP; TRAP-BETA; TRAPB
GeneCards (Weizmann)SSR2
Ensembl hg19 (Hinxton)ENSG00000163479 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163479 [Gene_View]  chr1:156009048-156020967 [Contig_View]  SSR2 [Vega]
ICGC DataPortalENSG00000163479
TCGA cBioPortalSSR2
AceView (NCBI)SSR2
Genatlas (Paris)SSR2
WikiGenes6746
SOURCE (Princeton)SSR2
Genetics Home Reference (NIH)SSR2
Genomic and cartography
GoldenPath hg38 (UCSC)SSR2  -     chr1:156009048-156020967 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSR2  -     1q22   [Description]    (hg19-Feb_2009)
EnsemblSSR2 - 1q22 [CytoView hg19]  SSR2 - 1q22 [CytoView hg38]
Mapping of homologs : NCBISSR2 [Mapview hg19]  SSR2 [Mapview hg38]
OMIM600867   
Gene and transcription
Genbank (Entrez)AK092473 AK222600 AK300678 AK313821 AY251536
RefSeq transcript (Entrez)NM_003145
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSR2
Cluster EST : UnigeneHs.74564 [ NCBI ]
CGAP (NCI)Hs.74564
Alternative Splicing GalleryENSG00000163479
Gene ExpressionSSR2 [ NCBI-GEO ]   SSR2 [ EBI - ARRAY_EXPRESS ]   SSR2 [ SEEK ]   SSR2 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6746
GTEX Portal (Tissue expression)SSR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43308   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43308  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43308
Splice isoforms : SwissVarP43308
PhosPhoSitePlusP43308
Domains : Interpro (EBI)TRAP_beta   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSR2
DMDM Disease mutations6746
Blocks (Seattle)SSR2
SuperfamilyP43308
Human Protein AtlasENSG00000163479
Peptide AtlasP43308
HPRD02923
IPIIPI00425902   IPI00981663   IPI00983684   IPI00977392   IPI00984873   IPI00981651   IPI00975664   IPI00976812   IPI00983094   
Protein Interaction databases
DIP (DOE-UCLA)P43308
IntAct (EBI)P43308
FunCoupENSG00000163479
BioGRIDSSR2
STRING (EMBL)SSR2
ZODIACSSR2
Ontologies - Pathways
QuickGOP43308
Ontology : AmiGOendoplasmic reticulum  endoplasmic reticulum membrane  cotranslational protein targeting to membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum  endoplasmic reticulum membrane  cotranslational protein targeting to membrane  integral component of membrane  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSSR2
Atlas of Cancer Signalling NetworkSSR2
Wikipedia pathwaysSSR2
Orthology - Evolution
OrthoDB6746
GeneTree (enSembl)ENSG00000163479
Phylogenetic Trees/Animal Genes : TreeFamSSR2
HOVERGENP43308
HOGENOMP43308
Homologs : HomoloGeneSSR2
Homology/Alignments : Family Browser (UCSC)SSR2
Gene fusions - Rearrangements
Fusion: TCGAARHGEF2 1q22 SSR2 1q22 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSR2
dbVarSSR2
ClinVarSSR2
1000_GenomesSSR2 
Exome Variant ServerSSR2
ExAC (Exome Aggregation Consortium)SSR2 (select the gene name)
Genetic variants : HAPMAP6746
Genomic Variants (DGV)SSR2 [DGVbeta]
DECIPHERSSR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSR2 
Mutations
ICGC Data PortalSSR2 
TCGA Data PortalSSR2 
Broad Tumor PortalSSR2
OASIS PortalSSR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSR2
DgiDB (Drug Gene Interaction Database)SSR2
DoCM (Curated mutations)SSR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSR2 (select a term)
intoGenSSR2
Cancer3DSSR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600867   
Orphanet
MedgenSSR2
Genetic Testing Registry SSR2
NextProtP43308 [Medical]
TSGene6746
GENETestsSSR2
Target ValidationSSR2
Huge Navigator SSR2 [HugePedia]
snp3D : Map Gene to Disease6746
BioCentury BCIQSSR2
ClinGenSSR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6746
Chemical/Pharm GKB GenePA36148
Clinical trialSSR2
Miscellaneous
canSAR (ICR)SSR2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSR2
EVEXSSR2
GoPubMedSSR2
iHOPSSR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:08:34 CEST 2017

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