Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SSR3 (signal sequence receptor subunit 3)

Identity

Alias_namessignal sequence receptor
Alias_symbol (synonym)TRAPG
Other alias
HGNC (Hugo) SSR3
LocusID (NCBI) 6747
Atlas_Id 42399
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 156539553 and ends at 156555200 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAP2K3 (17p11.2) / SSR3 (3q25.31)SSR3 (3q25.31) / CPEB4 (5q35.2)SSR3 (3q25.31) / KIF3B (20q11.21)
SSR3 (3q25.31) / MACF1 (1p34.3)SSR3 (3q25.31) / MAP2K3 (17p11.2)SSR3 (3q25.31) / PRPF6 (20q13.33)
SSR3 (3q25.31) / SATB1 (3p24.3)SSR3 (3q25.31) / SSR3 (3q25.31)SSR3 (3q25.31) / UBA3 (3p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)SSR3   11325
Cards
Entrez_Gene (NCBI)SSR3  6747  signal sequence receptor subunit 3
AliasesTRAPG
GeneCards (Weizmann)SSR3
Ensembl hg19 (Hinxton)ENSG00000114850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114850 [Gene_View]  chr3:156539553-156555200 [Contig_View]  SSR3 [Vega]
ICGC DataPortalENSG00000114850
TCGA cBioPortalSSR3
AceView (NCBI)SSR3
Genatlas (Paris)SSR3
WikiGenes6747
SOURCE (Princeton)SSR3
Genetics Home Reference (NIH)SSR3
Genomic and cartography
GoldenPath hg38 (UCSC)SSR3  -     chr3:156539553-156555200 -  3q25.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSR3  -     3q25.31   [Description]    (hg19-Feb_2009)
EnsemblSSR3 - 3q25.31 [CytoView hg19]  SSR3 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBISSR3 [Mapview hg19]  SSR3 [Mapview hg38]
OMIM606213   
Gene and transcription
Genbank (Entrez)AF087907 AF110647 AI225105 AK304364 AK312935
RefSeq transcript (Entrez)NM_001308197 NM_001308204 NM_001308205 NM_007107
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSR3
Cluster EST : UnigeneHs.660787 [ NCBI ]
CGAP (NCI)Hs.660787
Alternative Splicing GalleryENSG00000114850
Gene ExpressionSSR3 [ NCBI-GEO ]   SSR3 [ EBI - ARRAY_EXPRESS ]   SSR3 [ SEEK ]   SSR3 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6747
GTEX Portal (Tissue expression)SSR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNL2
Splice isoforms : SwissVarQ9UNL2
PhosPhoSitePlusQ9UNL2
Domains : Interpro (EBI)SSR3   
Domain families : Pfam (Sanger)TRAP-gamma (PF07074)   
Domain families : Pfam (NCBI)pfam07074   
Conserved Domain (NCBI)SSR3
DMDM Disease mutations6747
Blocks (Seattle)SSR3
SuperfamilyQ9UNL2
Human Protein AtlasENSG00000114850
Peptide AtlasQ9UNL2
HPRD16206
IPIIPI00009235   IPI00946150   IPI00945960   IPI00791847   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNL2
IntAct (EBI)Q9UNL2
FunCoupENSG00000114850
BioGRIDSSR3
STRING (EMBL)SSR3
ZODIACSSR3
Ontologies - Pathways
QuickGOQ9UNL2
Ontology : AmiGOintracellular  endoplasmic reticulum membrane  SRP-dependent cotranslational protein targeting to membrane  integral component of membrane  
Ontology : EGO-EBIintracellular  endoplasmic reticulum membrane  SRP-dependent cotranslational protein targeting to membrane  integral component of membrane  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSSR3
Atlas of Cancer Signalling NetworkSSR3
Wikipedia pathwaysSSR3
Orthology - Evolution
OrthoDB6747
GeneTree (enSembl)ENSG00000114850
Phylogenetic Trees/Animal Genes : TreeFamSSR3
HOVERGENQ9UNL2
HOGENOMQ9UNL2
Homologs : HomoloGeneSSR3
Homology/Alignments : Family Browser (UCSC)SSR3
Gene fusions - Rearrangements
Fusion : MitelmanMAP2K3/SSR3 [17p11.2/3q25.31]  [t(3;17)(q25;p11)]  
Fusion : MitelmanSSR3/MAP2K3 [3q25.31/17p11.2]  [t(3;17)(q25;p11)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSR3
dbVarSSR3
ClinVarSSR3
1000_GenomesSSR3 
Exome Variant ServerSSR3
ExAC (Exome Aggregation Consortium)SSR3 (select the gene name)
Genetic variants : HAPMAP6747
Genomic Variants (DGV)SSR3 [DGVbeta]
DECIPHERSSR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSR3 
Mutations
ICGC Data PortalSSR3 
TCGA Data PortalSSR3 
Broad Tumor PortalSSR3
OASIS PortalSSR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSR3
DgiDB (Drug Gene Interaction Database)SSR3
DoCM (Curated mutations)SSR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSR3 (select a term)
intoGenSSR3
Cancer3DSSR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606213   
Orphanet
MedgenSSR3
Genetic Testing Registry SSR3
NextProtQ9UNL2 [Medical]
TSGene6747
GENETestsSSR3
Target ValidationSSR3
Huge Navigator SSR3 [HugePedia]
snp3D : Map Gene to Disease6747
BioCentury BCIQSSR3
ClinGenSSR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6747
Chemical/Pharm GKB GenePA36149
Clinical trialSSR3
Miscellaneous
canSAR (ICR)SSR3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSR3
EVEXSSR3
GoPubMedSSR3
iHOPSSR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:15:45 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.