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SSR4 (signal sequence receptor subunit 4)

Identity

Alias_namessignal sequence receptor
Alias_symbol (synonym)TRAPD
Other aliasCDG1Y
HGNC (Hugo) SSR4
LocusID (NCBI) 6748
Atlas_Id 43807
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153794449 and ends at 153798512 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SSR4 (Xq28) / SSR4 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSR4   11326
Cards
Entrez_Gene (NCBI)SSR4  6748  signal sequence receptor subunit 4
AliasesCDG1Y; TRAPD
GeneCards (Weizmann)SSR4
Ensembl hg19 (Hinxton)ENSG00000180879 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180879 [Gene_View]  chrX:153794449-153798512 [Contig_View]  SSR4 [Vega]
ICGC DataPortalENSG00000180879
TCGA cBioPortalSSR4
AceView (NCBI)SSR4
Genatlas (Paris)SSR4
WikiGenes6748
SOURCE (Princeton)SSR4
Genetics Home Reference (NIH)SSR4
Genomic and cartography
GoldenPath hg38 (UCSC)SSR4  -     chrX:153794449-153798512 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSR4  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblSSR4 - Xq28 [CytoView hg19]  SSR4 - Xq28 [CytoView hg38]
Mapping of homologs : NCBISSR4 [Mapview hg19]  SSR4 [Mapview hg38]
OMIM300090   300934   
Gene and transcription
Genbank (Entrez)AK057117 AK094395 AK290493 AM393040 AM393516
RefSeq transcript (Entrez)NM_001204526 NM_001204527 NM_006280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSR4
Cluster EST : UnigeneHs.409223 [ NCBI ]
CGAP (NCI)Hs.409223
Alternative Splicing GalleryENSG00000180879
Gene ExpressionSSR4 [ NCBI-GEO ]   SSR4 [ EBI - ARRAY_EXPRESS ]   SSR4 [ SEEK ]   SSR4 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6748
GTEX Portal (Tissue expression)SSR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51571   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51571  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51571
Splice isoforms : SwissVarP51571
PhosPhoSitePlusP51571
Domains : Interpro (EBI)TRAP-delta   
Domain families : Pfam (Sanger)TRAP-delta (PF05404)   
Domain families : Pfam (NCBI)pfam05404   
Conserved Domain (NCBI)SSR4
DMDM Disease mutations6748
Blocks (Seattle)SSR4
SuperfamilyP51571
Human Protein AtlasENSG00000180879
Peptide AtlasP51571
HPRD02101
IPIIPI00019385   IPI01009057   IPI01008877   IPI00647421   IPI00646864   
Protein Interaction databases
DIP (DOE-UCLA)P51571
IntAct (EBI)P51571
FunCoupENSG00000180879
BioGRIDSSR4
STRING (EMBL)SSR4
ZODIACSSR4
Ontologies - Pathways
QuickGOP51571
Ontology : AmiGOSec61 translocon complex  integral component of membrane  extracellular exosome  
Ontology : EGO-EBISec61 translocon complex  integral component of membrane  extracellular exosome  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkSSR4
Atlas of Cancer Signalling NetworkSSR4
Wikipedia pathwaysSSR4
Orthology - Evolution
OrthoDB6748
GeneTree (enSembl)ENSG00000180879
Phylogenetic Trees/Animal Genes : TreeFamSSR4
HOVERGENP51571
HOGENOMP51571
Homologs : HomoloGeneSSR4
Homology/Alignments : Family Browser (UCSC)SSR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSR4
dbVarSSR4
ClinVarSSR4
1000_GenomesSSR4 
Exome Variant ServerSSR4
ExAC (Exome Aggregation Consortium)SSR4 (select the gene name)
Genetic variants : HAPMAP6748
Genomic Variants (DGV)SSR4 [DGVbeta]
DECIPHERSSR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSR4 
Mutations
ICGC Data PortalSSR4 
TCGA Data PortalSSR4 
Broad Tumor PortalSSR4
OASIS PortalSSR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSR4
DgiDB (Drug Gene Interaction Database)SSR4
DoCM (Curated mutations)SSR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSR4 (select a term)
intoGenSSR4
Cancer3DSSR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300090    300934   
Orphanet22502   
MedgenSSR4
Genetic Testing Registry SSR4
NextProtP51571 [Medical]
TSGene6748
GENETestsSSR4
Target ValidationSSR4
Huge Navigator SSR4 [HugePedia]
snp3D : Map Gene to Disease6748
BioCentury BCIQSSR4
ClinGenSSR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6748
Chemical/Pharm GKB GenePA36150
Clinical trialSSR4
Miscellaneous
canSAR (ICR)SSR4 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSR4
EVEXSSR4
GoPubMedSSR4
iHOPSSR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:33:08 CEST 2017

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