Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SSR4P1 (signal sequence receptor, delta pseudogene 1)

Identity

Alias_namesC21orf122
chromosome 21 open reading frame 122
signal sequence receptor, delta pseudogene 1
Alias_symbol (synonym)PRED90
MGC10960
PRED57
Other alias
HGNC (Hugo) SSR4P1
LocusID (NCBI) 728039
Atlas_Id 74262
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46490871 and ends at 46493126 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSR4P1   23131
Cards
Entrez_Gene (NCBI)SSR4P1  728039  signal sequence receptor, delta pseudogene 1
AliasesC21orf122; PRED57; PRED90
GeneCards (Weizmann)SSR4P1
Ensembl hg19 (Hinxton)ENSG00000235374 [Gene_View]  chr21:46490871-46493126 [Contig_View]  SSR4P1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000235374 [Gene_View]  chr21:46490871-46493126 [Contig_View]  SSR4P1 [Vega]
ICGC DataPortalENSG00000235374
TCGA cBioPortalSSR4P1
AceView (NCBI)SSR4P1
Genatlas (Paris)SSR4P1
WikiGenes728039
SOURCE (Princeton)SSR4P1
Genetics Home Reference (NIH)SSR4P1
Genomic and cartography
GoldenPath hg19 (UCSC)SSR4P1  -     chr21:46490871-46493126 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSR4P1  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblSSR4P1 - 21q22.3 [CytoView hg19]  SSR4P1 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBISSR4P1 [Mapview hg19]  SSR4P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC004343
RefSeq transcript (Entrez)NM_001080845 NM_032653
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)SSR4P1
Cluster EST : UnigeneHs.309203 [ NCBI ]
CGAP (NCI)Hs.309203
Alternative Splicing GalleryENSG00000235374
Gene ExpressionSSR4P1 [ NCBI-GEO ]   SSR4P1 [ EBI - ARRAY_EXPRESS ]   SSR4P1 [ SEEK ]   SSR4P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSR4P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728039
GTEX Portal (Tissue expression)SSR4P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSR4P1
DMDM Disease mutations728039
Blocks (Seattle)SSR4P1
Human Protein AtlasENSG00000235374
IPIIPI00013343   IPI00021687   IPI00646475   
Protein Interaction databases
FunCoupENSG00000235374
BioGRIDSSR4P1
STRING (EMBL)SSR4P1
ZODIACSSR4P1
Ontologies - Pathways
Huge Navigator SSR4P1 [HugePedia]
snp3D : Map Gene to Disease728039
BioCentury BCIQSSR4P1
ClinGenSSR4P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728039
Chemical/Pharm GKB GenePA134978042
Clinical trialSSR4P1
Miscellaneous
canSAR (ICR)SSR4P1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSR4P1
EVEXSSR4P1
GoPubMedSSR4P1
iHOPSSR4P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:46:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.