Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SSRP1 (structure specific recognition protein 1)

Identity

Other namesFACT
FACT80
T160
HGNC (Hugo) SSRP1
LocusID (NCBI) 6749
Location 11q12.1
Location_base_pair Starts at 57093459 and ends at 57103351 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SSRP1   11327
Cards
Entrez_Gene (NCBI)SSRP1  6749  structure specific recognition protein 1
GeneCards (Weizmann)SSRP1
Ensembl hg19 (Hinxton)ENSG00000149136 [Gene_View]  chr11:57093459-57103351 [Contig_View]  SSRP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000149136 [Gene_View]  chr11:57093459-57103351 [Contig_View]  SSRP1 [Vega]
ICGC DataPortalENSG00000149136
cBioPortalSSRP1
AceView (NCBI)SSRP1
Genatlas (Paris)SSRP1
WikiGenes6749
SOURCE (Princeton)SSRP1
Genomic and cartography
GoldenPath hg19 (UCSC)SSRP1  -     chr11:57093459-57103351 -  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSRP1  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblSSRP1 - 11q12.1 [CytoView hg19]  SSRP1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBISSRP1 [Mapview hg19]  SSRP1 [Mapview hg38]
OMIM604328   
Gene and transcription
Genbank (Entrez)AB209132 BC005116 BC091486 DQ893659 DQ895832
RefSeq transcript (Entrez)NM_003146
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838023 NW_004929380
Consensus coding sequences : CCDS (NCBI)SSRP1
Cluster EST : UnigeneHs.523680 [ NCBI ]
CGAP (NCI)Hs.523680
Alternative Splicing : Fast-db (Paris)GSHG0005775
Alternative Splicing GalleryENSG00000149136
Gene ExpressionSSRP1 [ NCBI-GEO ]     SSRP1 [ SEEK ]   SSRP1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08945 (Uniprot)
NextProtQ08945  [Medical]
With graphics : InterProQ08945
Splice isoforms : SwissVarQ08945 (Swissvar)
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)DUF1747    HMG_box_dom    PH_like_dom    SSrcognition    SSRP1_dom   
Related proteins : CluSTrQ08945
Domain families : Pfam (Sanger)HMG_box (PF00505)    Rtt106 (PF08512)    SSrecog (PF03531)   
Domain families : Pfam (NCBI)pfam00505    pfam08512    pfam03531   
Domain families : Smart (EMBL)HMG (SM00398)  
DMDM Disease mutations6749
Blocks (Seattle)Q08945
PDB (SRS)4IFS   
PDB (PDBSum)4IFS   
PDB (IMB)4IFS   
PDB (RSDB)4IFS   
Human Protein AtlasENSG00000149136
Peptide AtlasQ08945
HPRD05061
IPIIPI00005154   IPI00556260   IPI00985291   IPI00981139   
Protein Interaction databases
DIP (DOE-UCLA)Q08945
IntAct (EBI)Q08945
FunCoupENSG00000149136
BioGRIDSSRP1
IntegromeDBSSRP1
STRING (EMBL)SSRP1
Ontologies - Pathways
QuickGOQ08945
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleus  nucleoplasm  chromosome  nucleolus  cytoplasm  DNA replication  DNA repair  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  gene expression  viral process  poly(A) RNA binding  positive regulation of viral transcription  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleus  nucleoplasm  chromosome  nucleolus  cytoplasm  DNA replication  DNA repair  regulation of transcription, DNA-templated  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  gene expression  viral process  poly(A) RNA binding  positive regulation of viral transcription  
Protein Interaction DatabaseSSRP1
DoCM (Curated mutations)SSRP1
Wikipedia pathwaysSSRP1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerSSRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSRP1
dbVarSSRP1
ClinVarSSRP1
1000_GenomesSSRP1 
Exome Variant ServerSSRP1
SNP (GeneSNP Utah)SSRP1
SNP : HGBaseSSRP1
Genetic variants : HAPMAPSSRP1
Genomic VariantsSSRP1  SSRP1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000149136 
Somatic Mutations in Cancer : COSMICSSRP1 
CONAN: Copy Number AnalysisSSRP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:57093459-57103351
Mutations and Diseases : HGMDSSRP1
OMIM604328   
MedgenSSRP1
NextProtQ08945 [Medical]
GENETestsSSRP1
Disease Genetic AssociationSSRP1
Huge Navigator SSRP1 [HugePedia]  SSRP1 [HugeCancerGEM]
snp3D : Map Gene to Disease6749
DGIdb (Drug Gene Interaction db)SSRP1
General knowledge
Homologs : HomoloGeneSSRP1
Homology/Alignments : Family Browser (UCSC)SSRP1
Phylogenetic Trees/Animal Genes : TreeFamSSRP1
Chemical/Protein Interactions : CTD6749
Chemical/Pharm GKB GenePA36151
Clinical trialSSRP1
Cancer Resource (Charite)ENSG00000149136
Other databases
Probes
Litterature
PubMed95 Pubmed reference(s) in Entrez
CoreMineSSRP1
GoPubMedSSRP1
iHOPSSRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 01:44:21 CET 2014
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