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SSRP1 (structure specific recognition protein 1)

Identity

Other namesFACT
FACT80
T160
HGNC (Hugo) SSRP1
LocusID (NCBI) 6749
Location 11q12.1
Location_base_pair Starts at 57093459 and ends at 57103351 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SSRP1   11327
Entrez_Gene (NCBI)SSRP1  6749  structure specific recognition protein 1
Cards
GeneCards (Weizmann)SSRP1
Ensembl (Hinxton)ENSG00000149136 [Gene_View]  chr11:57093459-57103351 [Contig_View]  SSRP1 [Vega]
AceView (NCBI)SSRP1
Genatlas (Paris)SSRP1
SOURCE (Stanford)NM_003146
Genomic and cartography
GoldenPath (UCSC)SSRP1  -  11q12.1   chr11:57093459-57103351 -  11q12.1   [Description]    (hg19-Feb_2009)
EnsemblSSRP1 - 11q12.1 [CytoView]
Mapping of homologs : NCBISSRP1 [Mapview]
OMIM604328   
Gene and transcription
Genbank (Entrez)AB209132 BC005116 BC091486 DQ893659 DQ895832
RefSeq transcript (SRS)NM_003146
RefSeq transcript (Entrez)NM_003146
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838023 NW_004078072
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_167190 NW_001838023 NW_004078072
Consensus coding sequences : CCDS (NCBI)SSRP1
Cluster EST : UnigeneHs.523680 [ SRS ] Hs.523680 [ NCBI ]
CGAP (NCI)Hs.523680
Alternative Splicing : Fast-db (Paris)GSHG0005775
Alternative Splicing GalleryENSG00000149136
Gene ExpressionSSRP1 [ NCBI-GEO ]   SSRP1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08945 (SRS) Q08945 (Uniprot)
NextProtQ08945
With graphics : InterProQ08945
Splice isoforms : SwissVarQ08945(Swissvar)
Domaine pattern : Prosite (SRS)HMG_BOX_2 (PS50118)   
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (SRS)DUF1747    HMG_superfamily    SSrcognition    SSRP1_dom   
Domains : Interpro (EBI)DUF1747    HMG_superfamily    SSrcognition    SSRP1_dom   
Related proteins : CluSTrQ08945
Domain families : Pfam (SRS)HMG_box (PF00505)    Rtt106 (PF08512)    SSrecog (PF03531)   
Domain families : Pfam (Sanger)HMG_box (PF00505)    Rtt106 (PF08512)    SSrecog (PF03531)   
Domain families : Pfam (NCBI)pfam00505    pfam08512    pfam03531   
Domain families : Smart (EMBL)HMG (SM00398)  
DMDM6749
Blocks (Seattle)Q08945
Human Protein AtlasENSG00000149136
HPRD05061
IPIIPI00005154   IPI00556260   IPI00985291   IPI00981139   
Protein Interaction databases
DIP (DOE-UCLA)Q08945
IntAct (EBI)Q08945
FunCoupENSG00000149136
REACTOMESSRP1
Protein Interaction Database6749
BioGRIDSSRP1
InParanoidQ08945
Interologous Interaction database Q08945
IntegromeDBSSRP1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)SSRP1
SNP (GeneSNP Utah)SSRP1
SNP : HGBaseSSRP1
Genetic variants : HAPMAPSSRP1
Somatic Mutations in Cancer : COSMICSSRP1 
CONAN: Copy Number AnalysisSSRP1 
Mutations and Diseases : HGMDSSRP1
OMIM604328   
GENETests604328   
Disease Genetic AssociationSSRP1
Huge Navigator SSRP1 [HugePedia]  SSRP1 [HugeCancerGEM]
Genomic VariantsSSRP1  SSRP1 [DGVbeta]
snp3D : Map Gene to Disease6749
General knowledge
Homologs : HomoloGeneSSRP1
Homology/Alignments : Family Browser (UCSC)SSRP1
Phylogenetic Trees/Animal Genes : TreeFamSSRP1
Chemical/Protein Interactions : CTD6749
Chemical/Pharm GKB GenePA36151
Clinical trialSSRP1
Cancer Resource (Charite)ENSG00000149136
Ontology : AmiGODNA binding  protein binding  nucleus  nucleoplasm  chromosome  nucleolus  cytoplasm  DNA replication  DNA repair  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  gene expression  viral reproduction  positive regulation of viral transcription  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleoplasm  chromosome  nucleolus  cytoplasm  DNA replication  DNA repair  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  gene expression  viral reproduction  positive regulation of viral transcription  
Other databases
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
PubGeneSSRP1
iHOPSSRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:35:33 CEST 2013
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