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SSSCA1 (Sjogren syndrome/scleroderma autoantigen 1)

Identity

Alias_namesSjogren's syndrome/scleroderma autoantigen 1
Alias_symbol (synonym)p27
Other alias
HGNC (Hugo) SSSCA1
LocusID (NCBI) 10534
Atlas_Id 52356
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65570459 and ends at 65571888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SSSCA1 (11q13.1) / LYPLA1 (8q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSSCA1   11328
Cards
Entrez_Gene (NCBI)SSSCA1  10534  Sjogren syndrome/scleroderma autoantigen 1
Aliasesp27
GeneCards (Weizmann)SSSCA1
Ensembl hg19 (Hinxton)ENSG00000173465 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173465 [Gene_View]  chr11:65570459-65571888 [Contig_View]  SSSCA1 [Vega]
ICGC DataPortalENSG00000173465
TCGA cBioPortalSSSCA1
AceView (NCBI)SSSCA1
Genatlas (Paris)SSSCA1
WikiGenes10534
SOURCE (Princeton)SSSCA1
Genetics Home Reference (NIH)SSSCA1
Genomic and cartography
GoldenPath hg38 (UCSC)SSSCA1  -     chr11:65570459-65571888 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSSCA1  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblSSSCA1 - 11q13.1 [CytoView hg19]  SSSCA1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBISSSCA1 [Mapview hg19]  SSSCA1 [Mapview hg38]
OMIM606044   
Gene and transcription
Genbank (Entrez)AB001740 BC014791 BP351453 DQ891782 DQ894966
RefSeq transcript (Entrez)NM_001303024 NM_006396
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSSCA1
Cluster EST : UnigeneHs.25723 [ NCBI ]
CGAP (NCI)Hs.25723
Alternative Splicing GalleryENSG00000173465
Gene ExpressionSSSCA1 [ NCBI-GEO ]   SSSCA1 [ EBI - ARRAY_EXPRESS ]   SSSCA1 [ SEEK ]   SSSCA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSSCA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10534
GTEX Portal (Tissue expression)SSSCA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60232   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60232  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60232
Splice isoforms : SwissVarO60232
PhosPhoSitePlusO60232
Domains : Interpro (EBI)SSSCA1   
Domain families : Pfam (Sanger)Auto_anti-p27 (PF06677)   
Domain families : Pfam (NCBI)pfam06677   
Conserved Domain (NCBI)SSSCA1
DMDM Disease mutations10534
Blocks (Seattle)SSSCA1
SuperfamilyO60232
Human Protein AtlasENSG00000173465
Peptide AtlasO60232
HPRD06921
IPIIPI00028412   IPI00976464   IPI00975658   IPI00985077   IPI00977126   IPI00977633   
Protein Interaction databases
DIP (DOE-UCLA)O60232
IntAct (EBI)O60232
FunCoupENSG00000173465
BioGRIDSSSCA1
STRING (EMBL)SSSCA1
ZODIACSSSCA1
Ontologies - Pathways
QuickGOO60232
Ontology : AmiGOmitotic cell cycle  protein binding  identical protein binding  cell division  
Ontology : EGO-EBImitotic cell cycle  protein binding  identical protein binding  cell division  
NDEx NetworkSSSCA1
Atlas of Cancer Signalling NetworkSSSCA1
Wikipedia pathwaysSSSCA1
Orthology - Evolution
OrthoDB10534
GeneTree (enSembl)ENSG00000173465
Phylogenetic Trees/Animal Genes : TreeFamSSSCA1
HOVERGENO60232
HOGENOMO60232
Homologs : HomoloGeneSSSCA1
Homology/Alignments : Family Browser (UCSC)SSSCA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSSCA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSSCA1
dbVarSSSCA1
ClinVarSSSCA1
1000_GenomesSSSCA1 
Exome Variant ServerSSSCA1
ExAC (Exome Aggregation Consortium)SSSCA1 (select the gene name)
Genetic variants : HAPMAP10534
Genomic Variants (DGV)SSSCA1 [DGVbeta]
DECIPHERSSSCA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSSCA1 
Mutations
ICGC Data PortalSSSCA1 
TCGA Data PortalSSSCA1 
Broad Tumor PortalSSSCA1
OASIS PortalSSSCA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSSCA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSSCA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSSCA1
DgiDB (Drug Gene Interaction Database)SSSCA1
DoCM (Curated mutations)SSSCA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSSCA1 (select a term)
intoGenSSSCA1
Cancer3DSSSCA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606044   
Orphanet
MedgenSSSCA1
Genetic Testing Registry SSSCA1
NextProtO60232 [Medical]
TSGene10534
GENETestsSSSCA1
Huge Navigator SSSCA1 [HugePedia]
snp3D : Map Gene to Disease10534
BioCentury BCIQSSSCA1
ClinGenSSSCA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10534
Chemical/Pharm GKB GenePA36152
Clinical trialSSSCA1
Miscellaneous
canSAR (ICR)SSSCA1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSSCA1
EVEXSSSCA1
GoPubMedSSSCA1
iHOPSSSCA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:13 CEST 2017

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