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SSTR1 (somatostatin receptor 1)

Identity

Other aliasSRIF-2
SS-1-R
SS1-R
SS1R
HGNC (Hugo) SSTR1
LocusID (NCBI) 6751
Atlas_Id 42401
Location 14q21.1  [Link to chromosome band 14q21]
Location_base_pair Starts at 38207999 and ends at 38213063 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSTR1   11330
Cards
Entrez_Gene (NCBI)SSTR1  6751  somatostatin receptor 1
AliasesSRIF-2; SS-1-R; SS1-R; SS1R
GeneCards (Weizmann)SSTR1
Ensembl hg19 (Hinxton)ENSG00000139874 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139874 [Gene_View]  chr14:38207999-38213063 [Contig_View]  SSTR1 [Vega]
ICGC DataPortalENSG00000139874
TCGA cBioPortalSSTR1
AceView (NCBI)SSTR1
Genatlas (Paris)SSTR1
WikiGenes6751
SOURCE (Princeton)SSTR1
Genetics Home Reference (NIH)SSTR1
Genomic and cartography
GoldenPath hg38 (UCSC)SSTR1  -     chr14:38207999-38213063 +  14q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSTR1  -     14q21.1   [Description]    (hg19-Feb_2009)
EnsemblSSTR1 - 14q21.1 [CytoView hg19]  SSTR1 - 14q21.1 [CytoView hg38]
Mapping of homologs : NCBISSTR1 [Mapview hg19]  SSTR1 [Mapview hg38]
OMIM182451   
Gene and transcription
Genbank (Entrez)AK290868 BC035618 BX248780 DQ893328 DQ896644
RefSeq transcript (Entrez)NM_001049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSTR1
Cluster EST : UnigeneHs.248160 [ NCBI ]
CGAP (NCI)Hs.248160
Alternative Splicing GalleryENSG00000139874
Gene ExpressionSSTR1 [ NCBI-GEO ]   SSTR1 [ EBI - ARRAY_EXPRESS ]   SSTR1 [ SEEK ]   SSTR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSTR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6751
GTEX Portal (Tissue expression)SSTR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30872   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30872  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30872
Splice isoforms : SwissVarP30872
PhosPhoSitePlusP30872
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Somatstn_rcpt    Somatstn_rcpt_1   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)SSTR1
DMDM Disease mutations6751
Blocks (Seattle)SSTR1
SuperfamilyP30872
Human Protein AtlasENSG00000139874
Peptide AtlasP30872
HPRD01673
IPIIPI00027804   IPI00384021   
Protein Interaction databases
DIP (DOE-UCLA)P30872
IntAct (EBI)P30872
FunCoupENSG00000139874
BioGRIDSSTR1
STRING (EMBL)SSTR1
ZODIACSSTR1
Ontologies - Pathways
QuickGOP30872
Ontology : AmiGOsomatostatin receptor activity  cytoplasm  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  glutamate receptor signaling pathway  neuropeptide signaling pathway  cell-cell signaling  spermatogenesis  response to nutrient  digestion  negative regulation of cell proliferation  cerebellum development  forebrain development  somatostatin signaling pathway  response to starvation  neuropeptide binding  neuron projection  cellular response to estradiol stimulus  
Ontology : EGO-EBIsomatostatin receptor activity  cytoplasm  plasma membrane  integral component of plasma membrane  cell surface receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  glutamate receptor signaling pathway  neuropeptide signaling pathway  cell-cell signaling  spermatogenesis  response to nutrient  digestion  negative regulation of cell proliferation  cerebellum development  forebrain development  somatostatin signaling pathway  response to starvation  neuropeptide binding  neuron projection  cellular response to estradiol stimulus  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkSSTR1
Atlas of Cancer Signalling NetworkSSTR1
Wikipedia pathwaysSSTR1
Orthology - Evolution
OrthoDB6751
GeneTree (enSembl)ENSG00000139874
Phylogenetic Trees/Animal Genes : TreeFamSSTR1
HOVERGENP30872
HOGENOMP30872
Homologs : HomoloGeneSSTR1
Homology/Alignments : Family Browser (UCSC)SSTR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSTR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSTR1
dbVarSSTR1
ClinVarSSTR1
1000_GenomesSSTR1 
Exome Variant ServerSSTR1
ExAC (Exome Aggregation Consortium)SSTR1 (select the gene name)
Genetic variants : HAPMAP6751
Genomic Variants (DGV)SSTR1 [DGVbeta]
DECIPHERSSTR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSTR1 
Mutations
ICGC Data PortalSSTR1 
TCGA Data PortalSSTR1 
Broad Tumor PortalSSTR1
OASIS PortalSSTR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSTR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSTR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSTR1
DgiDB (Drug Gene Interaction Database)SSTR1
DoCM (Curated mutations)SSTR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSTR1 (select a term)
intoGenSSTR1
Cancer3DSSTR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182451   
Orphanet
MedgenSSTR1
Genetic Testing Registry SSTR1
NextProtP30872 [Medical]
TSGene6751
GENETestsSSTR1
Target ValidationSSTR1
Huge Navigator SSTR1 [HugePedia]
snp3D : Map Gene to Disease6751
BioCentury BCIQSSTR1
ClinGenSSTR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6751
Chemical/Pharm GKB GenePA36154
Clinical trialSSTR1
Miscellaneous
canSAR (ICR)SSTR1 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSTR1
EVEXSSTR1
GoPubMedSSTR1
iHOPSSTR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:57:33 CEST 2017

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