Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SSTR3 (somatostatin receptor 3)

Identity

Other aliasSS-3-R
SS3-R
SS3R
SSR-28
HGNC (Hugo) SSTR3
LocusID (NCBI) 6753
Atlas_Id 42403
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 37204237 and ends at 37212376 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSTR3   11332
Cards
Entrez_Gene (NCBI)SSTR3  6753  somatostatin receptor 3
AliasesSS-3-R; SS3-R; SS3R; SSR-28
GeneCards (Weizmann)SSTR3
Ensembl hg19 (Hinxton)ENSG00000278195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278195 [Gene_View]  chr22:37204237-37212376 [Contig_View]  SSTR3 [Vega]
ICGC DataPortalENSG00000278195
TCGA cBioPortalSSTR3
AceView (NCBI)SSTR3
Genatlas (Paris)SSTR3
WikiGenes6753
SOURCE (Princeton)SSTR3
Genetics Home Reference (NIH)SSTR3
Genomic and cartography
GoldenPath hg38 (UCSC)SSTR3  -     chr22:37204237-37212376 -  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSTR3  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblSSTR3 - 22q13.1 [CytoView hg19]  SSTR3 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBISSTR3 [Mapview hg19]  SSTR3 [Mapview hg38]
OMIM182453   
Gene and transcription
Genbank (Entrez)AK291165 BC042068 BC096829 BF513812 BF514979
RefSeq transcript (Entrez)NM_001051 NM_001278687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSTR3
Cluster EST : UnigeneHs.255208 [ NCBI ]
CGAP (NCI)Hs.255208
Alternative Splicing GalleryENSG00000278195
Gene ExpressionSSTR3 [ NCBI-GEO ]   SSTR3 [ EBI - ARRAY_EXPRESS ]   SSTR3 [ SEEK ]   SSTR3 [ MEM ]
Gene Expression Viewer (FireBrowse)SSTR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6753
GTEX Portal (Tissue expression)SSTR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32745   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32745  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32745
Splice isoforms : SwissVarP32745
PhosPhoSitePlusP32745
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Somatstn_rcpt    Somatstn_rcpt_3   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)SSTR3
DMDM Disease mutations6753
Blocks (Seattle)SSTR3
SuperfamilyP32745
Human Protein AtlasENSG00000278195
Peptide AtlasP32745
HPRD01675
IPIIPI00030283   
Protein Interaction databases
DIP (DOE-UCLA)P32745
IntAct (EBI)P32745
FunCoupENSG00000278195
BioGRIDSSTR3
STRING (EMBL)SSTR3
ZODIACSSTR3
Ontologies - Pathways
QuickGOP32745
Ontology : AmiGOG-protein coupled receptor activity  somatostatin receptor activity  receptor binding  protein binding  cytoplasm  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  neuropeptide signaling pathway  cell-cell signaling  chemical synaptic transmission  spermatogenesis  negative regulation of cell proliferation  hormone-mediated apoptotic signaling pathway  cerebellum development  forebrain development  somatostatin signaling pathway  response to starvation  neuropeptide binding  neuron projection  ciliary membrane  cellular response to glucocorticoid stimulus  cellular response to estradiol stimulus  non-motile cilium  
Ontology : EGO-EBIG-protein coupled receptor activity  somatostatin receptor activity  receptor binding  protein binding  cytoplasm  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  neuropeptide signaling pathway  cell-cell signaling  chemical synaptic transmission  spermatogenesis  negative regulation of cell proliferation  hormone-mediated apoptotic signaling pathway  cerebellum development  forebrain development  somatostatin signaling pathway  response to starvation  neuropeptide binding  neuron projection  ciliary membrane  cellular response to glucocorticoid stimulus  cellular response to estradiol stimulus  non-motile cilium  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkSSTR3
Atlas of Cancer Signalling NetworkSSTR3
Wikipedia pathwaysSSTR3
Orthology - Evolution
OrthoDB6753
GeneTree (enSembl)ENSG00000278195
Phylogenetic Trees/Animal Genes : TreeFamSSTR3
HOVERGENP32745
HOGENOMP32745
Homologs : HomoloGeneSSTR3
Homology/Alignments : Family Browser (UCSC)SSTR3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSTR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSTR3
dbVarSSTR3
ClinVarSSTR3
1000_GenomesSSTR3 
Exome Variant ServerSSTR3
ExAC (Exome Aggregation Consortium)SSTR3 (select the gene name)
Genetic variants : HAPMAP6753
Genomic Variants (DGV)SSTR3 [DGVbeta]
DECIPHERSSTR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSTR3 
Mutations
ICGC Data PortalSSTR3 
TCGA Data PortalSSTR3 
Broad Tumor PortalSSTR3
OASIS PortalSSTR3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSSTR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSTR3
DgiDB (Drug Gene Interaction Database)SSTR3
DoCM (Curated mutations)SSTR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSTR3 (select a term)
intoGenSSTR3
Cancer3DSSTR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182453   
Orphanet
MedgenSSTR3
Genetic Testing Registry SSTR3
NextProtP32745 [Medical]
TSGene6753
GENETestsSSTR3
Target ValidationSSTR3
Huge Navigator SSTR3 [HugePedia]
snp3D : Map Gene to Disease6753
BioCentury BCIQSSTR3
ClinGenSSTR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6753
Chemical/Pharm GKB GenePA36156
Clinical trialSSTR3
Miscellaneous
canSAR (ICR)SSTR3 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSTR3
EVEXSSTR3
GoPubMedSSTR3
iHOPSSTR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:57:34 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.