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SSTR4 (somatostatin receptor 4)

Identity

Other aliasSS-4-R
SS4-R
SS4R
HGNC (Hugo) SSTR4
LocusID (NCBI) 6754
Atlas_Id 42404
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23035420 and ends at 23036677 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSTR4   11333
Cards
Entrez_Gene (NCBI)SSTR4  6754  somatostatin receptor 4
AliasesSS-4-R; SS4-R; SS4R
GeneCards (Weizmann)SSTR4
Ensembl hg19 (Hinxton)ENSG00000132671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132671 [Gene_View]  chr20:23035420-23036677 [Contig_View]  SSTR4 [Vega]
ICGC DataPortalENSG00000132671
TCGA cBioPortalSSTR4
AceView (NCBI)SSTR4
Genatlas (Paris)SSTR4
WikiGenes6754
SOURCE (Princeton)SSTR4
Genetics Home Reference (NIH)SSTR4
Genomic and cartography
GoldenPath hg38 (UCSC)SSTR4  -     chr20:23035420-23036677 +  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSTR4  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblSSTR4 - 20p11.21 [CytoView hg19]  SSTR4 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBISSTR4 [Mapview hg19]  SSTR4 [Mapview hg38]
OMIM182454   
Gene and transcription
Genbank (Entrez)BC069063 BC117270 BC117272
RefSeq transcript (Entrez)NM_001052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSTR4
Cluster EST : UnigeneHs.673846 [ NCBI ]
CGAP (NCI)Hs.673846
Alternative Splicing GalleryENSG00000132671
Gene ExpressionSSTR4 [ NCBI-GEO ]   SSTR4 [ EBI - ARRAY_EXPRESS ]   SSTR4 [ SEEK ]   SSTR4 [ MEM ]
Gene Expression Viewer (FireBrowse)SSTR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6754
GTEX Portal (Tissue expression)SSTR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31391   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31391  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31391
Splice isoforms : SwissVarP31391
PhosPhoSitePlusP31391
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Somatstn_rcpt    Somatstn_rcpt_4   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)SSTR4
DMDM Disease mutations6754
Blocks (Seattle)SSTR4
SuperfamilyP31391
Human Protein AtlasENSG00000132671
Peptide AtlasP31391
HPRD01676
IPIIPI00306173   
Protein Interaction databases
DIP (DOE-UCLA)P31391
IntAct (EBI)P31391
FunCoupENSG00000132671
BioGRIDSSTR4
STRING (EMBL)SSTR4
ZODIACSSTR4
Ontologies - Pathways
QuickGOP31391
Ontology : AmiGOsomatostatin receptor activity  cytoplasm  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  chemical synaptic transmission  negative regulation of cell proliferation  cell migration  arachidonic acid metabolic process  negative regulation of cAMP metabolic process  forebrain development  somatostatin signaling pathway  neuropeptide binding  neuron projection  positive regulation of MAPK cascade  cellular response to glucocorticoid stimulus  
Ontology : EGO-EBIsomatostatin receptor activity  cytoplasm  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  chemical synaptic transmission  negative regulation of cell proliferation  cell migration  arachidonic acid metabolic process  negative regulation of cAMP metabolic process  forebrain development  somatostatin signaling pathway  neuropeptide binding  neuron projection  positive regulation of MAPK cascade  cellular response to glucocorticoid stimulus  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkSSTR4
Atlas of Cancer Signalling NetworkSSTR4
Wikipedia pathwaysSSTR4
Orthology - Evolution
OrthoDB6754
GeneTree (enSembl)ENSG00000132671
Phylogenetic Trees/Animal Genes : TreeFamSSTR4
HOVERGENP31391
HOGENOMP31391
Homologs : HomoloGeneSSTR4
Homology/Alignments : Family Browser (UCSC)SSTR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSTR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSTR4
dbVarSSTR4
ClinVarSSTR4
1000_GenomesSSTR4 
Exome Variant ServerSSTR4
ExAC (Exome Aggregation Consortium)SSTR4 (select the gene name)
Genetic variants : HAPMAP6754
Genomic Variants (DGV)SSTR4 [DGVbeta]
DECIPHERSSTR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSSTR4 
Mutations
ICGC Data PortalSSTR4 
TCGA Data PortalSSTR4 
Broad Tumor PortalSSTR4
OASIS PortalSSTR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSTR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSTR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSTR4
DgiDB (Drug Gene Interaction Database)SSTR4
DoCM (Curated mutations)SSTR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSTR4 (select a term)
intoGenSSTR4
Cancer3DSSTR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182454   
Orphanet
MedgenSSTR4
Genetic Testing Registry SSTR4
NextProtP31391 [Medical]
TSGene6754
GENETestsSSTR4
Huge Navigator SSTR4 [HugePedia]
snp3D : Map Gene to Disease6754
BioCentury BCIQSSTR4
ClinGenSSTR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6754
Chemical/Pharm GKB GenePA36157
Clinical trialSSTR4
Miscellaneous
canSAR (ICR)SSTR4 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSTR4
EVEXSSTR4
GoPubMedSSTR4
iHOPSSTR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:39:14 CEST 2017

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