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SSTR5-AS1 (SSTR5 antisense RNA 1)

Identity

Alias_namesSSTR5 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) SSTR5-AS1
LocusID (NCBI) 146336
Atlas_Id 74264
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1064093 and ends at 1078673 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSTR5-AS1   26502
Cards
Entrez_Gene (NCBI)SSTR5-AS1  146336  SSTR5 antisense RNA 1
Aliases
GeneCards (Weizmann)SSTR5-AS1
Ensembl hg19 (Hinxton)ENSG00000261713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261713 [Gene_View]  chr16:1064093-1078673 [Contig_View]  SSTR5-AS1 [Vega]
ICGC DataPortalENSG00000261713
TCGA cBioPortalSSTR5-AS1
AceView (NCBI)SSTR5-AS1
Genatlas (Paris)SSTR5-AS1
WikiGenes146336
SOURCE (Princeton)SSTR5-AS1
Genetics Home Reference (NIH)SSTR5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SSTR5-AS1  -     chr16:1064093-1078673 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SSTR5-AS1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSSTR5-AS1 - 16p13.3 [CytoView hg19]  SSTR5-AS1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISSTR5-AS1 [Mapview hg19]  SSTR5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056814 AW291498 BC068093 BC084558
RefSeq transcript (Entrez)NM_182510
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SSTR5-AS1
Cluster EST : UnigeneHs.250557 [ NCBI ]
CGAP (NCI)Hs.250557
Alternative Splicing GalleryENSG00000261713
Gene ExpressionSSTR5-AS1 [ NCBI-GEO ]   SSTR5-AS1 [ EBI - ARRAY_EXPRESS ]   SSTR5-AS1 [ SEEK ]   SSTR5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SSTR5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)146336
GTEX Portal (Tissue expression)SSTR5-AS1
Human Protein AtlasENSG00000261713-SSTR5-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SSTR5-AS1
DMDM Disease mutations146336
Blocks (Seattle)SSTR5-AS1
Human Protein Atlas [tissue]ENSG00000261713-SSTR5-AS1 [tissue]
HPRD08125
IPIIPI00065529   
Protein Interaction databases
FunCoupENSG00000261713
BioGRIDSSTR5-AS1
STRING (EMBL)SSTR5-AS1
ZODIACSSTR5-AS1
Ontologies - Pathways
Huge Navigator SSTR5-AS1 [HugePedia]
snp3D : Map Gene to Disease146336
BioCentury BCIQSSTR5-AS1
ClinGenSSTR5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146336
Clinical trialSSTR5-AS1
Miscellaneous
canSAR (ICR)SSTR5-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSTR5-AS1
EVEXSSTR5-AS1
GoPubMedSSTR5-AS1
iHOPSSTR5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:31:06 CET 2017

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