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SSTR5 (somatostatin receptor 5)

Identity

Other aliasSS-5-R
HGNC (Hugo) SSTR5
LocusID (NCBI) 6755
Atlas_Id 42405
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1128781 and ends at 1131454 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UBR5 (8q22.3) / SSTR5 (16p13.3)UBR5 8q22.3 / SSTR5 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSTR5   11334
Cards
Entrez_Gene (NCBI)SSTR5  6755  somatostatin receptor 5
AliasesSS-5-R
GeneCards (Weizmann)SSTR5
Ensembl hg19 (Hinxton)ENSG00000162009 [Gene_View]  chr16:1128781-1131454 [Contig_View]  SSTR5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162009 [Gene_View]  chr16:1128781-1131454 [Contig_View]  SSTR5 [Vega]
ICGC DataPortalENSG00000162009
TCGA cBioPortalSSTR5
AceView (NCBI)SSTR5
Genatlas (Paris)SSTR5
WikiGenes6755
SOURCE (Princeton)SSTR5
Genetics Home Reference (NIH)SSTR5
Genomic and cartography
GoldenPath hg19 (UCSC)SSTR5  -     chr16:1128781-1131454 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSTR5  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblSSTR5 - 16p13.3 [CytoView hg19]  SSTR5 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISSTR5 [Mapview hg19]  SSTR5 [Mapview hg38]
OMIM182455   
Gene and transcription
Genbank (Entrez)AK308381 BC141553 BC146576 DB202230 DQ448303
RefSeq transcript (Entrez)NM_001053 NM_001172560 NM_001172572 NM_001172573
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_016744 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)SSTR5
Cluster EST : UnigeneHs.449840 [ NCBI ]
CGAP (NCI)Hs.449840
Alternative Splicing GalleryENSG00000162009
Gene ExpressionSSTR5 [ NCBI-GEO ]   SSTR5 [ EBI - ARRAY_EXPRESS ]   SSTR5 [ SEEK ]   SSTR5 [ MEM ]
Gene Expression Viewer (FireBrowse)SSTR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6755
GTEX Portal (Tissue expression)SSTR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35346   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35346  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35346
Splice isoforms : SwissVarP35346
PhosPhoSitePlusP35346
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Somatstn_rcpt    Somatstn_rcpt_5   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)SSTR5
DMDM Disease mutations6755
Blocks (Seattle)SSTR5
SuperfamilyP35346
Human Protein AtlasENSG00000162009
Peptide AtlasP35346
HPRD01677
IPIIPI00018079   IPI00955007   
Protein Interaction databases
DIP (DOE-UCLA)P35346
IntAct (EBI)P35346
FunCoupENSG00000162009
BioGRIDSSTR5
STRING (EMBL)SSTR5
ZODIACSSTR5
Ontologies - Pathways
QuickGOP35346
Ontology : AmiGOsomatostatin receptor activity  nucleus  cytoplasm  plasma membrane  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  synaptic transmission  negative regulation of cell proliferation  positive regulation of cytokinesis  somatostatin signaling pathway  glucose homeostasis  neuropeptide binding  neuron projection  regulation of insulin secretion  cellular response to glucocorticoid stimulus  
Ontology : EGO-EBIsomatostatin receptor activity  nucleus  cytoplasm  plasma membrane  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger  adenylate cyclase-inhibiting G-protein coupled receptor signaling pathway  synaptic transmission  negative regulation of cell proliferation  positive regulation of cytokinesis  somatostatin signaling pathway  glucose homeostasis  neuropeptide binding  neuron projection  regulation of insulin secretion  cellular response to glucocorticoid stimulus  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkSSTR5
Atlas of Cancer Signalling NetworkSSTR5
Wikipedia pathwaysSSTR5
Orthology - Evolution
OrthoDB6755
GeneTree (enSembl)ENSG00000162009
Phylogenetic Trees/Animal Genes : TreeFamSSTR5
HOVERGENP35346
HOGENOMP35346
Homologs : HomoloGeneSSTR5
Homology/Alignments : Family Browser (UCSC)SSTR5
Gene fusions - Rearrangements
Fusion : MitelmanUBR5/SSTR5 [8q22.3/16p13.3]  [t(8;16)(q22;p13)]  
Fusion: TCGAUBR5 8q22.3 SSTR5 16p13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSTR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSTR5
dbVarSSTR5
ClinVarSSTR5
1000_GenomesSSTR5 
Exome Variant ServerSSTR5
ExAC (Exome Aggregation Consortium)SSTR5 (select the gene name)
Genetic variants : HAPMAP6755
Genomic Variants (DGV)SSTR5 [DGVbeta]
DECIPHER (Syndromes)16:1128781-1131454  ENSG00000162009
CONAN: Copy Number AnalysisSSTR5 
Mutations
ICGC Data PortalSSTR5 
TCGA Data PortalSSTR5 
Broad Tumor PortalSSTR5
OASIS PortalSSTR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSTR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSTR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSTR5
DgiDB (Drug Gene Interaction Database)SSTR5
DoCM (Curated mutations)SSTR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSTR5 (select a term)
intoGenSSTR5
Cancer3DSSTR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182455   
Orphanet
MedgenSSTR5
Genetic Testing Registry SSTR5
NextProtP35346 [Medical]
TSGene6755
GENETestsSSTR5
Huge Navigator SSTR5 [HugePedia]
snp3D : Map Gene to Disease6755
BioCentury BCIQSSTR5
ClinGenSSTR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6755
Chemical/Pharm GKB GenePA36158
Clinical trialSSTR5
Miscellaneous
canSAR (ICR)SSTR5 (select the gene name)
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSTR5
EVEXSSTR5
GoPubMedSSTR5
iHOPSSTR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:29:18 CET 2017

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