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SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase)

Identity

Alias_namesSsu72 RNA polymerase II CTD phosphatase homolog (yeast)
SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)
Alias_symbol (synonym)HSPC182
Other aliasPNAS-120
HGNC (Hugo) SSU72
LocusID (NCBI) 29101
Atlas_Id 54671
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1477053 and ends at 1510262 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CNN2 (19p13.3) / SSU72 (1p36.33)LPP (3q28) / SSU72 (1p36.33)MCPH1 (8p23.1) / SSU72 (1p36.33)
RARRES3 (11q12.3) / SSU72 (1p36.33)SKI (1p36.33) / SSU72 (1p36.33)SSU72 (1p36.33) / ASCC1 (10q22.1)
SSU72 (1p36.33) / PCBP3 (21q22.3)SSU72 (1p36.33) / TNXB (6p21.33)TMEM41B (11p15.4) / SSU72 (1p36.33)
ZNF207 (17q11.2) / SSU72 (1p36.33)SKI 1p36.33 / SSU72 1p36.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SSU72   25016
Cards
Entrez_Gene (NCBI)SSU72  29101  SSU72 homolog, RNA polymerase II CTD phosphatase
AliasesHSPC182; PNAS-120
GeneCards (Weizmann)SSU72
Ensembl hg19 (Hinxton)ENSG00000160075 [Gene_View]  chr1:1477053-1510262 [Contig_View]  SSU72 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160075 [Gene_View]  chr1:1477053-1510262 [Contig_View]  SSU72 [Vega]
ICGC DataPortalENSG00000160075
TCGA cBioPortalSSU72
AceView (NCBI)SSU72
Genatlas (Paris)SSU72
WikiGenes29101
SOURCE (Princeton)SSU72
Genetics Home Reference (NIH)SSU72
Genomic and cartography
GoldenPath hg19 (UCSC)SSU72  -     chr1:1477053-1510262 -  1p36.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SSU72  -     1p36.33   [Description]    (hg38-Dec_2013)
EnsemblSSU72 - 1p36.33 [CytoView hg19]  SSU72 - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBISSU72 [Mapview hg19]  SSU72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161530 AF277178 AF305818 AJ276409 AK001809
RefSeq transcript (Entrez)NM_014188
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)SSU72
Cluster EST : UnigeneHs.732583 [ NCBI ]
CGAP (NCI)Hs.732583
Alternative Splicing GalleryENSG00000160075
Gene ExpressionSSU72 [ NCBI-GEO ]   SSU72 [ EBI - ARRAY_EXPRESS ]   SSU72 [ SEEK ]   SSU72 [ MEM ]
Gene Expression Viewer (FireBrowse)SSU72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29101
GTEX Portal (Tissue expression)SSU72
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP77
Splice isoforms : SwissVarQ9NP77
PhosPhoSitePlusQ9NP77
Domains : Interpro (EBI)RNA_pol_II_suA   
Domain families : Pfam (Sanger)Ssu72 (PF04722)   
Domain families : Pfam (NCBI)pfam04722   
Conserved Domain (NCBI)SSU72
DMDM Disease mutations29101
Blocks (Seattle)SSU72
PDB (SRS)3O2Q    3O2S    4H3H    4H3K   
PDB (PDBSum)3O2Q    3O2S    4H3H    4H3K   
PDB (IMB)3O2Q    3O2S    4H3H    4H3K   
PDB (RSDB)3O2Q    3O2S    4H3H    4H3K   
Structural Biology KnowledgeBase3O2Q    3O2S    4H3H    4H3K   
SCOP (Structural Classification of Proteins)3O2Q    3O2S    4H3H    4H3K   
CATH (Classification of proteins structures)3O2Q    3O2S    4H3H    4H3K   
SuperfamilyQ9NP77
Human Protein AtlasENSG00000160075
Peptide AtlasQ9NP77
HPRD13712
IPIIPI00023556   IPI00073512   IPI00908331   IPI00064293   IPI00646934   IPI00515037   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP77
IntAct (EBI)Q9NP77
FunCoupENSG00000160075
BioGRIDSSU72
STRING (EMBL)SSU72
ZODIACSSU72
Ontologies - Pathways
QuickGOQ9NP77
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mRNA polyadenylation  CTD phosphatase activity  dephosphorylation of RNA polymerase II C-terminal domain  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mRNA polyadenylation  CTD phosphatase activity  dephosphorylation of RNA polymerase II C-terminal domain  
Pathways : KEGGmRNA surveillance pathway   
NDEx NetworkSSU72
Atlas of Cancer Signalling NetworkSSU72
Wikipedia pathwaysSSU72
Orthology - Evolution
OrthoDB29101
GeneTree (enSembl)ENSG00000160075
Phylogenetic Trees/Animal Genes : TreeFamSSU72
HOVERGENQ9NP77
HOGENOMQ9NP77
Homologs : HomoloGeneSSU72
Homology/Alignments : Family Browser (UCSC)SSU72
Gene fusions - Rearrangements
Fusion : MitelmanSKI/SSU72 [1p36.33/1p36.33]  [t(1;1)(p36;p36)]  
Fusion : MitelmanSSU72/ASCC1 [1p36.33/10q22.1]  [t(1;10)(p36;q22)]  
Fusion: TCGASKI 1p36.33 SSU72 1p36.33 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSSU72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SSU72
dbVarSSU72
ClinVarSSU72
1000_GenomesSSU72 
Exome Variant ServerSSU72
ExAC (Exome Aggregation Consortium)SSU72 (select the gene name)
Genetic variants : HAPMAP29101
Genomic Variants (DGV)SSU72 [DGVbeta]
DECIPHER (Syndromes)1:1477053-1510262  ENSG00000160075
CONAN: Copy Number AnalysisSSU72 
Mutations
ICGC Data PortalSSU72 
TCGA Data PortalSSU72 
Broad Tumor PortalSSU72
OASIS PortalSSU72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSSU72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSSU72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SSU72
DgiDB (Drug Gene Interaction Database)SSU72
DoCM (Curated mutations)SSU72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SSU72 (select a term)
intoGenSSU72
Cancer3DSSU72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSSU72
Genetic Testing Registry SSU72
NextProtQ9NP77 [Medical]
TSGene29101
GENETestsSSU72
Huge Navigator SSU72 [HugePedia]
snp3D : Map Gene to Disease29101
BioCentury BCIQSSU72
ClinGenSSU72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29101
Chemical/Pharm GKB GenePA142670866
Clinical trialSSU72
Miscellaneous
canSAR (ICR)SSU72 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSSU72
EVEXSSU72
GoPubMedSSU72
iHOPSSU72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:58 CEST 2017

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